Experiment: m.b. Cholin acetate 153.15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_633 and HP15_634 are separated by 27 nucleotides HP15_634 and HP15_635 are separated by 139 nucleotides HP15_635 and HP15_636 are separated by 160 nucleotides
HP15_633: HP15_633 - dTDP-4-dehydrorhamnose reductase-like protein, at 654,918 to 655,751
_633
HP15_634: HP15_634 - transcriptional regulator, Crp/Fnr family, at 655,779 to 656,528
_634
HP15_635: HP15_635 - 3-oxoacyl-(acyl carrier protein) synthase I, at 656,668 to 657,852
_635
HP15_636: HP15_636 - GTP-binding protein, ribosome biogenesis, YlqF, at 658,013 to 658,951
_636
Position (kb) 656
657
658 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 655.959 kb on - strand, within HP15_634 at 656.069 kb on + strand, within HP15_634 at 656.240 kb on - strand, within HP15_634 at 656.271 kb on + strand, within HP15_634 at 656.399 kb on + strand, within HP15_634 at 656.658 kb on - strand at 656.658 kb on - strand at 656.658 kb on - strand at 656.868 kb on - strand, within HP15_635 at 656.870 kb on - strand, within HP15_635 at 657.011 kb on + strand, within HP15_635 at 657.019 kb on - strand, within HP15_635 at 657.039 kb on + strand, within HP15_635 at 657.039 kb on + strand, within HP15_635 at 657.047 kb on - strand, within HP15_635 at 657.052 kb on - strand, within HP15_635 at 657.089 kb on - strand, within HP15_635 at 657.089 kb on - strand, within HP15_635 at 657.345 kb on - strand, within HP15_635 at 657.350 kb on + strand, within HP15_635 at 657.454 kb on + strand, within HP15_635 at 657.513 kb on - strand, within HP15_635 at 657.513 kb on - strand, within HP15_635 at 657.682 kb on - strand, within HP15_635 at 658.019 kb on - strand at 658.126 kb on + strand, within HP15_636 at 658.134 kb on - strand, within HP15_636 at 658.134 kb on - strand, within HP15_636
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM remove 655,959 - HP15_634 0.24 -0.6 656,069 + HP15_634 0.39 +0.0 656,240 - HP15_634 0.61 -0.4 656,271 + HP15_634 0.66 +0.4 656,399 + HP15_634 0.83 -0.1 656,658 - +0.3 656,658 - -0.4 656,658 - +1.0 656,868 - HP15_635 0.17 -3.3 656,870 - HP15_635 0.17 -0.9 657,011 + HP15_635 0.29 -1.4 657,019 - HP15_635 0.30 -0.4 657,039 + HP15_635 0.31 -1.3 657,039 + HP15_635 0.31 -1.3 657,047 - HP15_635 0.32 -2.0 657,052 - HP15_635 0.32 -2.0 657,089 - HP15_635 0.36 -1.7 657,089 - HP15_635 0.36 -1.2 657,345 - HP15_635 0.57 -0.5 657,350 + HP15_635 0.58 +0.9 657,454 + HP15_635 0.66 +0.5 657,513 - HP15_635 0.71 -0.2 657,513 - HP15_635 0.71 -0.2 657,682 - HP15_635 0.86 +0.8 658,019 - -0.2 658,126 + HP15_636 0.12 +0.3 658,134 - HP15_636 0.13 -0.6 658,134 - HP15_636 0.13 +0.2
Or see this region's nucleotide sequence