Experiment: m.b. Cholin acetate 153.15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3770 and HP15_3771 are separated by 248 nucleotides HP15_3771 and HP15_3772 are separated by 36 nucleotides
HP15_3770: HP15_3770 - MATE efflux family protein, at 3,991,408 to 3,992,736
_3770
HP15_3771: HP15_3771 - membrane protein containing cytochrome c oxidase, subunit II domain, at 3,992,985 to 3,994,064
_3771
HP15_3772: HP15_3772 - cytochrome c oxidase, subunit I, at 3,994,101 to 3,995,705
_3772
Position (kb)
3992
3993
3994
3995 Strain fitness (log2 ratio)
-1
0
1 at 3991.985 kb on + strand, within HP15_3770 at 3991.995 kb on + strand, within HP15_3770 at 3992.069 kb on + strand, within HP15_3770 at 3992.081 kb on + strand, within HP15_3770 at 3992.166 kb on + strand, within HP15_3770 at 3992.174 kb on - strand, within HP15_3770 at 3992.401 kb on + strand, within HP15_3770 at 3992.404 kb on - strand, within HP15_3770 at 3992.501 kb on + strand, within HP15_3770 at 3992.501 kb on + strand, within HP15_3770 at 3992.501 kb on + strand, within HP15_3770 at 3992.501 kb on + strand, within HP15_3770 at 3992.501 kb on + strand, within HP15_3770 at 3992.501 kb on + strand, within HP15_3770 at 3992.501 kb on + strand, within HP15_3770 at 3992.509 kb on - strand, within HP15_3770 at 3992.509 kb on - strand, within HP15_3770 at 3992.509 kb on - strand, within HP15_3770 at 3992.509 kb on - strand, within HP15_3770 at 3992.509 kb on - strand, within HP15_3770 at 3992.509 kb on - strand, within HP15_3770 at 3992.509 kb on - strand, within HP15_3770 at 3992.552 kb on + strand, within HP15_3770 at 3992.582 kb on - strand, within HP15_3770 at 3992.621 kb on + strand at 3992.661 kb on + strand at 3992.661 kb on + strand at 3992.661 kb on + strand at 3992.687 kb on - strand at 3992.689 kb on + strand at 3992.697 kb on - strand at 3992.697 kb on - strand at 3992.697 kb on - strand at 3992.704 kb on - strand at 3992.823 kb on + strand at 3992.842 kb on - strand at 3992.852 kb on - strand at 3992.866 kb on + strand at 3992.887 kb on - strand at 3992.923 kb on - strand at 3992.979 kb on + strand at 3992.988 kb on - strand at 3993.002 kb on - strand at 3993.028 kb on + strand at 3993.028 kb on + strand at 3993.036 kb on - strand at 3993.036 kb on - strand at 3993.120 kb on + strand, within HP15_3771 at 3993.304 kb on - strand, within HP15_3771 at 3993.418 kb on - strand, within HP15_3771 at 3993.499 kb on + strand, within HP15_3771 at 3993.507 kb on - strand, within HP15_3771 at 3993.512 kb on - strand, within HP15_3771 at 3993.570 kb on + strand, within HP15_3771 at 3993.570 kb on + strand, within HP15_3771 at 3993.633 kb on + strand, within HP15_3771 at 3993.641 kb on - strand, within HP15_3771 at 3993.685 kb on + strand, within HP15_3771 at 3993.686 kb on + strand, within HP15_3771 at 3993.709 kb on - strand, within HP15_3771 at 3993.785 kb on + strand, within HP15_3771 at 3994.183 kb on - strand at 3994.213 kb on - strand at 3994.295 kb on + strand, within HP15_3772 at 3994.303 kb on - strand, within HP15_3772 at 3994.356 kb on + strand, within HP15_3772 at 3994.484 kb on + strand, within HP15_3772 at 3994.484 kb on + strand, within HP15_3772 at 3994.492 kb on - strand, within HP15_3772 at 3994.517 kb on + strand, within HP15_3772 at 3994.563 kb on + strand, within HP15_3772 at 3994.563 kb on + strand, within HP15_3772 at 3994.568 kb on + strand, within HP15_3772 at 3994.576 kb on + strand, within HP15_3772 at 3994.589 kb on + strand, within HP15_3772 at 3994.599 kb on + strand, within HP15_3772 at 3994.607 kb on - strand, within HP15_3772 at 3994.669 kb on + strand, within HP15_3772 at 3994.719 kb on + strand, within HP15_3772 at 3994.774 kb on - strand, within HP15_3772 at 3994.856 kb on + strand, within HP15_3772 at 3994.864 kb on - strand, within HP15_3772 at 3994.868 kb on + strand, within HP15_3772 at 3994.876 kb on - strand, within HP15_3772 at 3994.890 kb on + strand, within HP15_3772 at 3994.892 kb on + strand, within HP15_3772 at 3994.892 kb on + strand, within HP15_3772 at 3994.900 kb on + strand, within HP15_3772 at 3994.908 kb on - strand, within HP15_3772 at 3995.022 kb on - strand, within HP15_3772 at 3995.034 kb on - strand, within HP15_3772
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM remove 3,991,985 + HP15_3770 0.43 +0.6 3,991,995 + HP15_3770 0.44 +0.9 3,992,069 + HP15_3770 0.50 +0.1 3,992,081 + HP15_3770 0.51 -0.2 3,992,166 + HP15_3770 0.57 -0.3 3,992,174 - HP15_3770 0.58 +0.6 3,992,401 + HP15_3770 0.75 -0.1 3,992,404 - HP15_3770 0.75 -0.5 3,992,501 + HP15_3770 0.82 -0.3 3,992,501 + HP15_3770 0.82 -0.0 3,992,501 + HP15_3770 0.82 -0.4 3,992,501 + HP15_3770 0.82 +0.1 3,992,501 + HP15_3770 0.82 +0.1 3,992,501 + HP15_3770 0.82 +0.8 3,992,501 + HP15_3770 0.82 +0.2 3,992,509 - HP15_3770 0.83 -0.4 3,992,509 - HP15_3770 0.83 +0.0 3,992,509 - HP15_3770 0.83 -0.1 3,992,509 - HP15_3770 0.83 +1.1 3,992,509 - HP15_3770 0.83 +0.6 3,992,509 - HP15_3770 0.83 -0.0 3,992,509 - HP15_3770 0.83 +0.1 3,992,552 + HP15_3770 0.86 +0.4 3,992,582 - HP15_3770 0.88 +0.8 3,992,621 + -0.0 3,992,661 + +0.2 3,992,661 + +0.1 3,992,661 + +0.3 3,992,687 - +0.1 3,992,689 + +0.0 3,992,697 - -0.2 3,992,697 - +0.0 3,992,697 - -0.5 3,992,704 - -0.7 3,992,823 + +0.3 3,992,842 - -0.8 3,992,852 - -0.6 3,992,866 + +0.6 3,992,887 - +0.2 3,992,923 - +0.1 3,992,979 + -0.5 3,992,988 - +0.4 3,993,002 - +1.0 3,993,028 + +0.4 3,993,028 + -0.4 3,993,036 - +0.2 3,993,036 - +0.0 3,993,120 + HP15_3771 0.12 -0.1 3,993,304 - HP15_3771 0.30 -1.0 3,993,418 - HP15_3771 0.40 -0.9 3,993,499 + HP15_3771 0.48 -0.8 3,993,507 - HP15_3771 0.48 -0.9 3,993,512 - HP15_3771 0.49 -0.4 3,993,570 + HP15_3771 0.54 -0.3 3,993,570 + HP15_3771 0.54 -0.2 3,993,633 + HP15_3771 0.60 +0.4 3,993,641 - HP15_3771 0.61 +0.4 3,993,685 + HP15_3771 0.65 +0.4 3,993,686 + HP15_3771 0.65 -0.2 3,993,709 - HP15_3771 0.67 -0.4 3,993,785 + HP15_3771 0.74 -0.2 3,994,183 - -0.5 3,994,213 - +0.1 3,994,295 + HP15_3772 0.12 -0.1 3,994,303 - HP15_3772 0.13 -0.1 3,994,356 + HP15_3772 0.16 +0.7 3,994,484 + HP15_3772 0.24 +0.0 3,994,484 + HP15_3772 0.24 -0.2 3,994,492 - HP15_3772 0.24 -0.2 3,994,517 + HP15_3772 0.26 -0.2 3,994,563 + HP15_3772 0.29 +0.3 3,994,563 + HP15_3772 0.29 -0.0 3,994,568 + HP15_3772 0.29 +0.4 3,994,576 + HP15_3772 0.30 +0.7 3,994,589 + HP15_3772 0.30 +0.6 3,994,599 + HP15_3772 0.31 +0.3 3,994,607 - HP15_3772 0.32 +0.7 3,994,669 + HP15_3772 0.35 +0.2 3,994,719 + HP15_3772 0.39 +1.3 3,994,774 - HP15_3772 0.42 +0.6 3,994,856 + HP15_3772 0.47 -0.7 3,994,864 - HP15_3772 0.48 +0.2 3,994,868 + HP15_3772 0.48 +0.1 3,994,876 - HP15_3772 0.48 -1.4 3,994,890 + HP15_3772 0.49 +0.2 3,994,892 + HP15_3772 0.49 -0.0 3,994,892 + HP15_3772 0.49 -1.2 3,994,900 + HP15_3772 0.50 -0.1 3,994,908 - HP15_3772 0.50 -0.0 3,995,022 - HP15_3772 0.57 -0.7 3,995,034 - HP15_3772 0.58 +0.1
Or see this region's nucleotide sequence