Experiment: m.b. Cholin acetate 153.15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2758 and HP15_2759 are separated by 7 nucleotides HP15_2759 and HP15_2761 are separated by 171 nucleotides HP15_2761 and HP15_2760 overlap by 4 nucleotides HP15_2760 and HP15_2762 overlap by 80 nucleotides
HP15_2758: HP15_2758 - conserved hypothetical protein, membrane, at 2,912,846 to 2,913,310
_2758
HP15_2759: HP15_2759 - conserved hypothetical protein, at 2,913,318 to 2,913,857
_2759
HP15_2761: HP15_2761 - transcriptional regulator, GntR family with aminotransferase domain protein, at 2,914,029 to 2,915,462
_2761
HP15_2760: HP15_2760 - methyltransferase domain family, at 2,915,459 to 2,916,187
_2760
HP15_2762: HP15_2762 - transcriptional regulator, LysR family protein, at 2,916,108 to 2,917,010
_2762
Position (kb)
2914
2915
2916 Strain fitness (log2 ratio)
-1
0
1
2 at 2913.060 kb on + strand, within HP15_2758 at 2913.235 kb on + strand, within HP15_2758 at 2913.293 kb on + strand at 2913.312 kb on - strand at 2913.312 kb on - strand at 2913.332 kb on + strand at 2913.340 kb on - strand at 2913.398 kb on - strand, within HP15_2759 at 2913.432 kb on - strand, within HP15_2759 at 2913.540 kb on + strand, within HP15_2759 at 2913.589 kb on + strand, within HP15_2759 at 2913.747 kb on + strand, within HP15_2759 at 2913.869 kb on + strand at 2913.937 kb on + strand at 2914.044 kb on + strand at 2914.130 kb on - strand at 2914.205 kb on + strand, within HP15_2761 at 2914.213 kb on - strand, within HP15_2761 at 2914.213 kb on - strand, within HP15_2761 at 2914.213 kb on - strand, within HP15_2761 at 2914.361 kb on + strand, within HP15_2761 at 2914.361 kb on + strand, within HP15_2761 at 2914.410 kb on + strand, within HP15_2761 at 2914.439 kb on + strand, within HP15_2761 at 2914.474 kb on + strand, within HP15_2761 at 2914.642 kb on + strand, within HP15_2761 at 2914.642 kb on + strand, within HP15_2761 at 2914.642 kb on + strand, within HP15_2761 at 2914.650 kb on - strand, within HP15_2761 at 2914.762 kb on + strand, within HP15_2761 at 2914.785 kb on + strand, within HP15_2761 at 2914.909 kb on - strand, within HP15_2761 at 2914.961 kb on + strand, within HP15_2761 at 2915.034 kb on - strand, within HP15_2761 at 2915.052 kb on - strand, within HP15_2761 at 2915.060 kb on + strand, within HP15_2761 at 2915.060 kb on + strand, within HP15_2761 at 2915.060 kb on + strand, within HP15_2761 at 2915.063 kb on - strand, within HP15_2761 at 2915.065 kb on + strand, within HP15_2761 at 2915.068 kb on - strand, within HP15_2761 at 2915.068 kb on - strand, within HP15_2761 at 2915.078 kb on - strand, within HP15_2761 at 2915.083 kb on - strand, within HP15_2761 at 2915.193 kb on - strand, within HP15_2761 at 2915.298 kb on - strand, within HP15_2761 at 2915.308 kb on - strand, within HP15_2761 at 2915.366 kb on + strand at 2915.421 kb on - strand at 2915.513 kb on + strand at 2915.513 kb on + strand at 2915.518 kb on + strand at 2915.518 kb on + strand at 2915.518 kb on + strand at 2915.518 kb on + strand at 2915.719 kb on + strand, within HP15_2760 at 2915.848 kb on + strand, within HP15_2760 at 2916.027 kb on + strand, within HP15_2760 at 2916.178 kb on - strand at 2916.184 kb on - strand at 2916.227 kb on + strand, within HP15_2762 at 2916.257 kb on + strand, within HP15_2762 at 2916.267 kb on + strand, within HP15_2762 at 2916.280 kb on - strand, within HP15_2762 at 2916.302 kb on - strand, within HP15_2762 at 2916.368 kb on + strand, within HP15_2762 at 2916.438 kb on - strand, within HP15_2762
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM remove 2,913,060 + HP15_2758 0.46 +0.0 2,913,235 + HP15_2758 0.84 -0.4 2,913,293 + -0.1 2,913,312 - -0.3 2,913,312 - +0.8 2,913,332 + +0.2 2,913,340 - +0.0 2,913,398 - HP15_2759 0.15 +0.1 2,913,432 - HP15_2759 0.21 +0.2 2,913,540 + HP15_2759 0.41 +0.0 2,913,589 + HP15_2759 0.50 +0.2 2,913,747 + HP15_2759 0.79 -0.1 2,913,869 + +0.5 2,913,937 + -0.8 2,914,044 + +0.1 2,914,130 - +0.2 2,914,205 + HP15_2761 0.12 +0.3 2,914,213 - HP15_2761 0.13 +0.6 2,914,213 - HP15_2761 0.13 -0.5 2,914,213 - HP15_2761 0.13 +1.5 2,914,361 + HP15_2761 0.23 -0.6 2,914,361 + HP15_2761 0.23 -0.3 2,914,410 + HP15_2761 0.27 +0.1 2,914,439 + HP15_2761 0.29 -0.3 2,914,474 + HP15_2761 0.31 -0.6 2,914,642 + HP15_2761 0.43 +0.0 2,914,642 + HP15_2761 0.43 +0.9 2,914,642 + HP15_2761 0.43 -0.6 2,914,650 - HP15_2761 0.43 -0.0 2,914,762 + HP15_2761 0.51 +0.0 2,914,785 + HP15_2761 0.53 -0.2 2,914,909 - HP15_2761 0.61 +2.3 2,914,961 + HP15_2761 0.65 +0.3 2,915,034 - HP15_2761 0.70 -0.2 2,915,052 - HP15_2761 0.71 -0.4 2,915,060 + HP15_2761 0.72 -0.8 2,915,060 + HP15_2761 0.72 -0.2 2,915,060 + HP15_2761 0.72 -0.4 2,915,063 - HP15_2761 0.72 +0.2 2,915,065 + HP15_2761 0.72 -0.4 2,915,068 - HP15_2761 0.72 -0.2 2,915,068 - HP15_2761 0.72 -0.9 2,915,078 - HP15_2761 0.73 -0.1 2,915,083 - HP15_2761 0.74 -0.7 2,915,193 - HP15_2761 0.81 +0.6 2,915,298 - HP15_2761 0.88 -0.1 2,915,308 - HP15_2761 0.89 -0.5 2,915,366 + -0.7 2,915,421 - -0.1 2,915,513 + -0.4 2,915,513 + +0.3 2,915,518 + +0.0 2,915,518 + +0.4 2,915,518 + +0.5 2,915,518 + -1.3 2,915,719 + HP15_2760 0.36 -0.0 2,915,848 + HP15_2760 0.53 +0.1 2,916,027 + HP15_2760 0.78 -0.1 2,916,178 - +0.3 2,916,184 - +0.5 2,916,227 + HP15_2762 0.13 +1.0 2,916,257 + HP15_2762 0.17 -0.3 2,916,267 + HP15_2762 0.18 -0.5 2,916,280 - HP15_2762 0.19 -0.2 2,916,302 - HP15_2762 0.21 -0.8 2,916,368 + HP15_2762 0.29 +0.2 2,916,438 - HP15_2762 0.37 -0.5
Or see this region's nucleotide sequence