Experiment: m.b. Cholin acetate 153.15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1400 and HP15_1401 are separated by 78 nucleotides
HP15_1400: HP15_1400 - fructose-bisphosphate aldolase B, at 1,476,365 to 1,477,429
_1400
HP15_1401: HP15_1401 - shikimate/quinate 5-dehydrogenase, at 1,477,508 to 1,479,619
_1401
Position (kb)
1477
1478
1479
1480 Strain fitness (log2 ratio)
-2
-1
0
1 at 1476.525 kb on + strand, within HP15_1400 at 1476.526 kb on + strand, within HP15_1400 at 1476.533 kb on - strand, within HP15_1400 at 1476.791 kb on + strand, within HP15_1400 at 1476.814 kb on - strand, within HP15_1400 at 1476.928 kb on - strand, within HP15_1400 at 1477.012 kb on + strand, within HP15_1400 at 1477.034 kb on + strand, within HP15_1400 at 1477.096 kb on + strand, within HP15_1400 at 1477.216 kb on + strand, within HP15_1400 at 1477.238 kb on + strand, within HP15_1400 at 1477.269 kb on + strand, within HP15_1400 at 1477.270 kb on - strand, within HP15_1400 at 1477.392 kb on - strand at 1477.448 kb on - strand at 1477.557 kb on + strand at 1477.577 kb on - strand at 1477.670 kb on + strand at 1477.670 kb on + strand at 1477.670 kb on + strand at 1477.706 kb on + strand at 1478.103 kb on - strand, within HP15_1401 at 1478.103 kb on - strand, within HP15_1401 at 1478.105 kb on + strand, within HP15_1401 at 1478.164 kb on - strand, within HP15_1401 at 1478.203 kb on - strand, within HP15_1401 at 1478.261 kb on + strand, within HP15_1401 at 1478.279 kb on - strand, within HP15_1401 at 1478.400 kb on - strand, within HP15_1401 at 1478.417 kb on - strand, within HP15_1401 at 1478.420 kb on + strand, within HP15_1401 at 1478.534 kb on + strand, within HP15_1401 at 1478.539 kb on + strand, within HP15_1401 at 1478.609 kb on + strand, within HP15_1401 at 1478.807 kb on + strand, within HP15_1401 at 1478.815 kb on - strand, within HP15_1401 at 1478.823 kb on + strand, within HP15_1401 at 1478.831 kb on - strand, within HP15_1401 at 1478.841 kb on - strand, within HP15_1401 at 1478.942 kb on - strand, within HP15_1401 at 1478.942 kb on - strand, within HP15_1401 at 1478.942 kb on - strand, within HP15_1401 at 1478.974 kb on + strand, within HP15_1401 at 1479.010 kb on - strand, within HP15_1401 at 1479.019 kb on + strand, within HP15_1401 at 1479.239 kb on + strand, within HP15_1401 at 1479.327 kb on + strand, within HP15_1401 at 1479.384 kb on - strand, within HP15_1401 at 1479.470 kb on - strand at 1479.503 kb on - strand at 1479.513 kb on + strand at 1479.631 kb on + strand at 1479.805 kb on - strand at 1479.862 kb on + strand at 1480.042 kb on + strand at 1480.164 kb on + strand at 1480.227 kb on + strand at 1480.264 kb on - strand at 1480.383 kb on - strand at 1480.428 kb on - strand at 1480.493 kb on + strand at 1480.496 kb on - strand at 1480.546 kb on - strand at 1480.547 kb on + strand at 1480.548 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM remove 1,476,525 + HP15_1400 0.15 +0.4 1,476,526 + HP15_1400 0.15 -0.1 1,476,533 - HP15_1400 0.16 -0.1 1,476,791 + HP15_1400 0.40 -0.2 1,476,814 - HP15_1400 0.42 -0.3 1,476,928 - HP15_1400 0.53 +1.1 1,477,012 + HP15_1400 0.61 +1.1 1,477,034 + HP15_1400 0.63 -0.8 1,477,096 + HP15_1400 0.69 -0.7 1,477,216 + HP15_1400 0.80 -0.1 1,477,238 + HP15_1400 0.82 +0.1 1,477,269 + HP15_1400 0.85 -0.6 1,477,270 - HP15_1400 0.85 -0.3 1,477,392 - -0.1 1,477,448 - -0.8 1,477,557 + -0.6 1,477,577 - +0.5 1,477,670 + -0.2 1,477,670 + -0.3 1,477,670 + -0.1 1,477,706 + +0.3 1,478,103 - HP15_1401 0.28 -0.8 1,478,103 - HP15_1401 0.28 +0.3 1,478,105 + HP15_1401 0.28 +1.0 1,478,164 - HP15_1401 0.31 -0.3 1,478,203 - HP15_1401 0.33 -0.0 1,478,261 + HP15_1401 0.36 -0.9 1,478,279 - HP15_1401 0.37 +0.1 1,478,400 - HP15_1401 0.42 +0.2 1,478,417 - HP15_1401 0.43 -0.0 1,478,420 + HP15_1401 0.43 -0.1 1,478,534 + HP15_1401 0.49 -0.0 1,478,539 + HP15_1401 0.49 +0.2 1,478,609 + HP15_1401 0.52 +0.3 1,478,807 + HP15_1401 0.62 +0.2 1,478,815 - HP15_1401 0.62 +0.3 1,478,823 + HP15_1401 0.62 +0.2 1,478,831 - HP15_1401 0.63 -1.0 1,478,841 - HP15_1401 0.63 +0.3 1,478,942 - HP15_1401 0.68 -0.0 1,478,942 - HP15_1401 0.68 -0.2 1,478,942 - HP15_1401 0.68 -2.1 1,478,974 + HP15_1401 0.69 +0.1 1,479,010 - HP15_1401 0.71 -0.2 1,479,019 + HP15_1401 0.72 +0.2 1,479,239 + HP15_1401 0.82 +0.6 1,479,327 + HP15_1401 0.86 +0.5 1,479,384 - HP15_1401 0.89 -0.1 1,479,470 - -0.3 1,479,503 - +0.1 1,479,513 + -0.1 1,479,631 + -0.8 1,479,805 - -0.8 1,479,862 + -0.4 1,480,042 + -0.0 1,480,164 + -1.7 1,480,227 + -1.0 1,480,264 - -0.7 1,480,383 - -0.2 1,480,428 - +0.1 1,480,493 + -0.1 1,480,496 - +0.1 1,480,546 - -0.5 1,480,547 + -0.1 1,480,548 + +0.2
Or see this region's nucleotide sequence