Experiment: 24 hours of 100ug/mL streptomycin treatment after 3 hour phosphate starvation in M5G
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02525 and CCNA_03968 overlap by 4 nucleotides CCNA_03968 and CCNA_02526 overlap by 4 nucleotides CCNA_02526 and CCNA_02527 overlap by 32 nucleotides CCNA_02527 and CCNA_02528 are separated by 31 nucleotides
CCNA_02525: CCNA_02525 - aspartate carbamoyltransferase, at 2,673,609 to 2,674,607
_02525
CCNA_03968: CCNA_03968 - hypothetical protein, at 2,674,604 to 2,674,744
_03968
CCNA_02526: CCNA_02526 - dihydroorotase, at 2,674,741 to 2,676,042
_02526
CCNA_02527: CCNA_02527 - hypothetical protein, at 2,676,011 to 2,676,541
_02527
CCNA_02528: CCNA_02528 - PlsY-like acyl-phosphate glycerol 3-phosphate acyltransferase, at 2,676,573 to 2,677,229
_02528
Position (kb)
2674
2675
2676
2677 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 2673.767 kb on - strand, within CCNA_02525 at 2673.767 kb on - strand, within CCNA_02525 at 2673.782 kb on - strand, within CCNA_02525 at 2673.818 kb on + strand, within CCNA_02525 at 2673.844 kb on + strand, within CCNA_02525 at 2673.873 kb on + strand, within CCNA_02525 at 2673.881 kb on - strand, within CCNA_02525 at 2673.896 kb on + strand, within CCNA_02525 at 2673.902 kb on + strand, within CCNA_02525 at 2673.902 kb on + strand, within CCNA_02525 at 2673.902 kb on + strand, within CCNA_02525 at 2673.902 kb on + strand, within CCNA_02525 at 2673.902 kb on + strand, within CCNA_02525 at 2673.902 kb on + strand, within CCNA_02525 at 2673.902 kb on + strand, within CCNA_02525 at 2673.902 kb on + strand, within CCNA_02525 at 2673.902 kb on + strand, within CCNA_02525 at 2673.910 kb on - strand, within CCNA_02525 at 2673.926 kb on + strand, within CCNA_02525 at 2673.927 kb on + strand, within CCNA_02525 at 2673.934 kb on - strand, within CCNA_02525 at 2673.936 kb on - strand, within CCNA_02525 at 2673.970 kb on + strand, within CCNA_02525 at 2673.985 kb on - strand, within CCNA_02525 at 2674.024 kb on + strand, within CCNA_02525 at 2674.034 kb on + strand, within CCNA_02525 at 2674.080 kb on + strand, within CCNA_02525 at 2674.080 kb on + strand, within CCNA_02525 at 2674.088 kb on - strand, within CCNA_02525 at 2674.091 kb on + strand, within CCNA_02525 at 2674.137 kb on - strand, within CCNA_02525 at 2674.169 kb on - strand, within CCNA_02525 at 2674.169 kb on - strand, within CCNA_02525 at 2674.207 kb on + strand, within CCNA_02525 at 2674.207 kb on + strand, within CCNA_02525 at 2674.207 kb on + strand, within CCNA_02525 at 2674.207 kb on + strand, within CCNA_02525 at 2674.215 kb on - strand, within CCNA_02525 at 2674.215 kb on - strand, within CCNA_02525 at 2674.215 kb on - strand, within CCNA_02525 at 2674.215 kb on - strand, within CCNA_02525 at 2674.215 kb on - strand, within CCNA_02525 at 2674.251 kb on - strand, within CCNA_02525 at 2674.251 kb on - strand, within CCNA_02525 at 2674.278 kb on + strand, within CCNA_02525 at 2674.302 kb on + strand, within CCNA_02525 at 2674.302 kb on + strand, within CCNA_02525 at 2674.307 kb on + strand, within CCNA_02525 at 2674.310 kb on - strand, within CCNA_02525 at 2674.320 kb on - strand, within CCNA_02525 at 2674.341 kb on + strand, within CCNA_02525 at 2674.410 kb on - strand, within CCNA_02525 at 2674.509 kb on + strand at 2674.510 kb on + strand at 2674.534 kb on - strand at 2674.555 kb on + strand at 2674.589 kb on + strand at 2674.599 kb on + strand at 2674.611 kb on + strand at 2674.646 kb on + strand, within CCNA_03968 at 2674.646 kb on + strand, within CCNA_03968 at 2674.654 kb on - strand, within CCNA_03968 at 2674.654 kb on - strand, within CCNA_03968 at 2674.666 kb on - strand, within CCNA_03968 at 2674.720 kb on - strand, within CCNA_03968 at 2674.724 kb on - strand, within CCNA_03968 at 2674.726 kb on + strand, within CCNA_03968 at 2674.731 kb on + strand at 2674.731 kb on + strand at 2674.734 kb on - strand at 2674.748 kb on + strand at 2674.748 kb on + strand at 2674.865 kb on + strand at 2674.878 kb on + strand, within CCNA_02526 at 2674.878 kb on + strand, within CCNA_02526 at 2674.878 kb on + strand, within CCNA_02526 at 2674.878 kb on + strand, within CCNA_02526 at 2674.878 kb on + strand, within CCNA_02526 at 2674.878 kb on + strand, within CCNA_02526 at 2674.878 kb on + strand, within CCNA_02526 at 2674.878 kb on + strand, within CCNA_02526 at 2674.878 kb on + strand at 2674.878 kb on + strand, within CCNA_02526 at 2674.878 kb on + strand, within CCNA_02526 at 2674.878 kb on + strand, within CCNA_02526 at 2674.886 kb on - strand, within CCNA_02526 at 2674.886 kb on - strand, within CCNA_02526 at 2674.886 kb on - strand, within CCNA_02526 at 2674.886 kb on - strand, within CCNA_02526 at 2674.886 kb on - strand, within CCNA_02526 at 2674.886 kb on - strand, within CCNA_02526 at 2674.886 kb on - strand, within CCNA_02526 at 2674.886 kb on - strand, within CCNA_02526 at 2674.886 kb on - strand, within CCNA_02526 at 2674.886 kb on - strand, within CCNA_02526 at 2674.886 kb on - strand, within CCNA_02526 at 2674.886 kb on - strand, within CCNA_02526 at 2674.886 kb on - strand, within CCNA_02526 at 2674.886 kb on - strand, within CCNA_02526 at 2674.915 kb on - strand, within CCNA_02526 at 2674.922 kb on + strand, within CCNA_02526 at 2675.020 kb on + strand, within CCNA_02526 at 2675.040 kb on + strand, within CCNA_02526 at 2675.040 kb on + strand, within CCNA_02526 at 2675.048 kb on - strand, within CCNA_02526 at 2675.081 kb on + strand, within CCNA_02526 at 2675.081 kb on + strand, within CCNA_02526 at 2675.089 kb on - strand, within CCNA_02526 at 2675.142 kb on + strand, within CCNA_02526 at 2675.142 kb on + strand, within CCNA_02526 at 2675.143 kb on + strand, within CCNA_02526 at 2675.187 kb on - strand, within CCNA_02526 at 2675.240 kb on + strand, within CCNA_02526 at 2675.245 kb on + strand, within CCNA_02526 at 2675.265 kb on - strand, within CCNA_02526 at 2675.270 kb on - strand, within CCNA_02526 at 2675.274 kb on + strand, within CCNA_02526 at 2675.275 kb on + strand, within CCNA_02526 at 2675.275 kb on - strand, within CCNA_02526 at 2675.283 kb on - strand, within CCNA_02526 at 2675.304 kb on + strand, within CCNA_02526 at 2675.320 kb on + strand, within CCNA_02526 at 2675.345 kb on - strand, within CCNA_02526 at 2675.371 kb on + strand, within CCNA_02526 at 2675.401 kb on + strand, within CCNA_02526 at 2675.424 kb on + strand, within CCNA_02526 at 2675.455 kb on + strand, within CCNA_02526 at 2675.485 kb on + strand, within CCNA_02526 at 2675.485 kb on + strand, within CCNA_02526 at 2675.502 kb on + strand, within CCNA_02526 at 2675.502 kb on + strand, within CCNA_02526 at 2675.502 kb on + strand, within CCNA_02526 at 2675.502 kb on + strand, within CCNA_02526 at 2675.503 kb on + strand, within CCNA_02526 at 2675.510 kb on - strand, within CCNA_02526 at 2675.510 kb on - strand, within CCNA_02526 at 2675.510 kb on - strand, within CCNA_02526 at 2675.533 kb on - strand, within CCNA_02526 at 2675.582 kb on + strand, within CCNA_02526 at 2675.592 kb on + strand, within CCNA_02526 at 2675.634 kb on + strand, within CCNA_02526 at 2675.636 kb on - strand, within CCNA_02526 at 2675.642 kb on - strand, within CCNA_02526 at 2675.642 kb on - strand, within CCNA_02526 at 2675.654 kb on - strand, within CCNA_02526 at 2675.661 kb on - strand, within CCNA_02526 at 2675.666 kb on - strand at 2675.684 kb on + strand, within CCNA_02526 at 2675.692 kb on - strand, within CCNA_02526 at 2675.755 kb on + strand, within CCNA_02526 at 2675.777 kb on - strand, within CCNA_02526 at 2675.778 kb on + strand, within CCNA_02526 at 2675.786 kb on - strand, within CCNA_02526 at 2675.788 kb on - strand, within CCNA_02526 at 2675.841 kb on + strand, within CCNA_02526 at 2675.841 kb on + strand, within CCNA_02526 at 2675.848 kb on + strand, within CCNA_02526 at 2675.985 kb on + strand at 2675.992 kb on + strand at 2676.059 kb on + strand at 2676.059 kb on + strand at 2676.059 kb on + strand at 2676.067 kb on - strand, within CCNA_02527 at 2676.067 kb on - strand, within CCNA_02527 at 2676.067 kb on - strand, within CCNA_02527 at 2676.074 kb on + strand, within CCNA_02527 at 2676.082 kb on - strand, within CCNA_02527 at 2676.120 kb on + strand, within CCNA_02527 at 2676.189 kb on + strand, within CCNA_02527 at 2676.212 kb on - strand, within CCNA_02527 at 2676.215 kb on + strand, within CCNA_02527 at 2676.215 kb on + strand, within CCNA_02527 at 2676.215 kb on + strand, within CCNA_02527 at 2676.223 kb on - strand, within CCNA_02527 at 2676.245 kb on - strand, within CCNA_02527 at 2676.247 kb on + strand, within CCNA_02527 at 2676.290 kb on + strand, within CCNA_02527 at 2676.292 kb on + strand, within CCNA_02527 at 2676.308 kb on - strand, within CCNA_02527 at 2676.329 kb on + strand, within CCNA_02527 at 2676.357 kb on - strand, within CCNA_02527 at 2676.361 kb on - strand, within CCNA_02527 at 2676.393 kb on + strand, within CCNA_02527 at 2676.401 kb on - strand, within CCNA_02527 at 2676.485 kb on - strand, within CCNA_02527 at 2676.488 kb on + strand, within CCNA_02527 at 2676.496 kb on - strand at 2676.496 kb on - strand at 2676.519 kb on + strand at 2676.558 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 24 hours of 100ug/mL streptomycin treatment after 3 hour phosphate starvation in M5G remove 2,673,767 - CCNA_02525 0.16 -0.7 2,673,767 - CCNA_02525 0.16 -2.7 2,673,782 - CCNA_02525 0.17 -3.8 2,673,818 + CCNA_02525 0.21 -3.3 2,673,844 + CCNA_02525 0.24 -2.8 2,673,873 + CCNA_02525 0.26 -2.0 2,673,881 - CCNA_02525 0.27 -2.6 2,673,896 + CCNA_02525 0.29 -0.0 2,673,902 + CCNA_02525 0.29 -3.4 2,673,902 + CCNA_02525 0.29 -2.0 2,673,902 + CCNA_02525 0.29 -2.6 2,673,902 + CCNA_02525 0.29 -2.3 2,673,902 + CCNA_02525 0.29 -3.4 2,673,902 + CCNA_02525 0.29 -1.8 2,673,902 + CCNA_02525 0.29 -1.0 2,673,902 + CCNA_02525 0.29 -2.3 2,673,902 + CCNA_02525 0.29 -2.3 2,673,910 - CCNA_02525 0.30 -1.4 2,673,926 + CCNA_02525 0.32 -3.3 2,673,927 + CCNA_02525 0.32 -2.3 2,673,934 - CCNA_02525 0.33 -2.6 2,673,936 - CCNA_02525 0.33 -1.8 2,673,970 + CCNA_02525 0.36 -1.0 2,673,985 - CCNA_02525 0.38 -3.5 2,674,024 + CCNA_02525 0.42 -1.5 2,674,034 + CCNA_02525 0.43 -2.4 2,674,080 + CCNA_02525 0.47 -2.2 2,674,080 + CCNA_02525 0.47 -1.5 2,674,088 - CCNA_02525 0.48 -1.3 2,674,091 + CCNA_02525 0.48 -2.3 2,674,137 - CCNA_02525 0.53 -0.7 2,674,169 - CCNA_02525 0.56 -3.6 2,674,169 - CCNA_02525 0.56 -3.0 2,674,207 + CCNA_02525 0.60 -3.1 2,674,207 + CCNA_02525 0.60 +0.3 2,674,207 + CCNA_02525 0.60 -3.1 2,674,207 + CCNA_02525 0.60 -2.2 2,674,215 - CCNA_02525 0.61 -1.7 2,674,215 - CCNA_02525 0.61 -1.7 2,674,215 - CCNA_02525 0.61 -1.2 2,674,215 - CCNA_02525 0.61 -0.0 2,674,215 - CCNA_02525 0.61 -2.7 2,674,251 - CCNA_02525 0.64 -2.6 2,674,251 - CCNA_02525 0.64 -2.7 2,674,278 + CCNA_02525 0.67 -4.1 2,674,302 + CCNA_02525 0.69 -1.7 2,674,302 + CCNA_02525 0.69 -3.0 2,674,307 + CCNA_02525 0.70 -1.8 2,674,310 - CCNA_02525 0.70 -1.2 2,674,320 - CCNA_02525 0.71 -1.9 2,674,341 + CCNA_02525 0.73 -0.9 2,674,410 - CCNA_02525 0.80 -1.5 2,674,509 + -3.4 2,674,510 + -3.5 2,674,534 - -2.2 2,674,555 + -4.2 2,674,589 + +0.5 2,674,599 + +0.9 2,674,611 + +0.2 2,674,646 + CCNA_03968 0.30 +1.1 2,674,646 + CCNA_03968 0.30 +0.1 2,674,654 - CCNA_03968 0.35 -0.5 2,674,654 - CCNA_03968 0.35 +0.8 2,674,666 - CCNA_03968 0.44 -0.9 2,674,720 - CCNA_03968 0.82 -0.5 2,674,724 - CCNA_03968 0.85 -0.1 2,674,726 + CCNA_03968 0.87 +0.1 2,674,731 + -0.3 2,674,731 + +0.4 2,674,734 - -0.8 2,674,748 + -3.4 2,674,748 + -2.8 2,674,865 + -3.5 2,674,878 + CCNA_02526 0.11 -0.6 2,674,878 + CCNA_02526 0.11 -4.5 2,674,878 + CCNA_02526 0.11 -3.7 2,674,878 + CCNA_02526 0.11 -2.9 2,674,878 + CCNA_02526 0.11 -3.1 2,674,878 + CCNA_02526 0.11 -1.6 2,674,878 + CCNA_02526 0.11 -4.6 2,674,878 + CCNA_02526 0.11 -4.4 2,674,878 + +0.4 2,674,878 + CCNA_02526 0.11 -3.0 2,674,878 + CCNA_02526 0.11 -0.9 2,674,878 + CCNA_02526 0.11 -2.7 2,674,886 - CCNA_02526 0.11 -0.9 2,674,886 - CCNA_02526 0.11 -1.8 2,674,886 - CCNA_02526 0.11 -4.5 2,674,886 - CCNA_02526 0.11 -3.4 2,674,886 - CCNA_02526 0.11 -1.8 2,674,886 - CCNA_02526 0.11 -0.8 2,674,886 - CCNA_02526 0.11 -1.5 2,674,886 - CCNA_02526 0.11 -3.5 2,674,886 - CCNA_02526 0.11 -2.3 2,674,886 - CCNA_02526 0.11 -0.6 2,674,886 - CCNA_02526 0.11 -1.0 2,674,886 - CCNA_02526 0.11 -1.3 2,674,886 - CCNA_02526 0.11 -2.0 2,674,886 - CCNA_02526 0.11 -1.0 2,674,915 - CCNA_02526 0.13 -1.9 2,674,922 + CCNA_02526 0.14 -3.2 2,675,020 + CCNA_02526 0.21 -1.8 2,675,040 + CCNA_02526 0.23 -2.2 2,675,040 + CCNA_02526 0.23 -1.5 2,675,048 - CCNA_02526 0.24 -0.2 2,675,081 + CCNA_02526 0.26 -1.5 2,675,081 + CCNA_02526 0.26 -2.6 2,675,089 - CCNA_02526 0.27 +0.4 2,675,142 + CCNA_02526 0.31 -4.7 2,675,142 + CCNA_02526 0.31 -3.2 2,675,143 + CCNA_02526 0.31 -1.2 2,675,187 - CCNA_02526 0.34 -1.8 2,675,240 + CCNA_02526 0.38 -6.0 2,675,245 + CCNA_02526 0.39 -2.1 2,675,265 - CCNA_02526 0.40 -2.0 2,675,270 - CCNA_02526 0.41 -3.4 2,675,274 + CCNA_02526 0.41 -0.6 2,675,275 + CCNA_02526 0.41 -2.9 2,675,275 - CCNA_02526 0.41 -1.0 2,675,283 - CCNA_02526 0.42 -2.0 2,675,304 + CCNA_02526 0.43 -2.7 2,675,320 + CCNA_02526 0.44 -0.8 2,675,345 - CCNA_02526 0.46 -2.2 2,675,371 + CCNA_02526 0.48 -1.0 2,675,401 + CCNA_02526 0.51 -2.4 2,675,424 + CCNA_02526 0.52 -3.0 2,675,455 + CCNA_02526 0.55 -2.9 2,675,485 + CCNA_02526 0.57 -1.2 2,675,485 + CCNA_02526 0.57 -1.4 2,675,502 + CCNA_02526 0.58 -0.9 2,675,502 + CCNA_02526 0.58 -3.0 2,675,502 + CCNA_02526 0.58 -3.8 2,675,502 + CCNA_02526 0.58 -0.9 2,675,503 + CCNA_02526 0.59 -2.4 2,675,510 - CCNA_02526 0.59 -1.0 2,675,510 - CCNA_02526 0.59 -1.2 2,675,510 - CCNA_02526 0.59 -2.2 2,675,533 - CCNA_02526 0.61 -2.8 2,675,582 + CCNA_02526 0.65 -3.8 2,675,592 + CCNA_02526 0.65 -0.8 2,675,634 + CCNA_02526 0.69 -3.3 2,675,636 - CCNA_02526 0.69 -3.0 2,675,642 - CCNA_02526 0.69 -2.0 2,675,642 - CCNA_02526 0.69 -2.8 2,675,654 - CCNA_02526 0.70 +0.4 2,675,661 - CCNA_02526 0.71 -1.8 2,675,666 - -1.8 2,675,684 + CCNA_02526 0.72 -2.1 2,675,692 - CCNA_02526 0.73 -0.9 2,675,755 + CCNA_02526 0.78 -2.0 2,675,777 - CCNA_02526 0.80 -2.6 2,675,778 + CCNA_02526 0.80 -2.7 2,675,786 - CCNA_02526 0.80 -1.2 2,675,788 - CCNA_02526 0.80 -3.3 2,675,841 + CCNA_02526 0.84 -3.8 2,675,841 + CCNA_02526 0.84 -0.9 2,675,848 + CCNA_02526 0.85 -2.8 2,675,985 + -2.3 2,675,992 + -3.3 2,676,059 + -0.2 2,676,059 + +0.1 2,676,059 + -1.2 2,676,067 - CCNA_02527 0.11 +0.1 2,676,067 - CCNA_02527 0.11 -0.1 2,676,067 - CCNA_02527 0.11 -0.2 2,676,074 + CCNA_02527 0.12 -0.6 2,676,082 - CCNA_02527 0.13 -0.7 2,676,120 + CCNA_02527 0.21 -0.4 2,676,189 + CCNA_02527 0.34 -0.3 2,676,212 - CCNA_02527 0.38 -1.2 2,676,215 + CCNA_02527 0.38 -0.1 2,676,215 + CCNA_02527 0.38 +0.0 2,676,215 + CCNA_02527 0.38 +0.7 2,676,223 - CCNA_02527 0.40 -1.3 2,676,245 - CCNA_02527 0.44 +1.3 2,676,247 + CCNA_02527 0.44 +0.3 2,676,290 + CCNA_02527 0.53 +0.1 2,676,292 + CCNA_02527 0.53 -0.8 2,676,308 - CCNA_02527 0.56 -0.3 2,676,329 + CCNA_02527 0.60 -0.5 2,676,357 - CCNA_02527 0.65 -0.3 2,676,361 - CCNA_02527 0.66 +0.3 2,676,393 + CCNA_02527 0.72 -0.3 2,676,401 - CCNA_02527 0.73 -0.8 2,676,485 - CCNA_02527 0.89 -1.3 2,676,488 + CCNA_02527 0.90 +0.8 2,676,496 - +1.2 2,676,496 - -0.6 2,676,519 + -0.2 2,676,558 + +0.0
Or see this region's nucleotide sequence