Experiment: Phenylacetic 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS35860 and BPHYT_RS35865 are separated by 358 nucleotides BPHYT_RS35865 and BPHYT_RS35870 are separated by 72 nucleotides
BPHYT_RS35860: BPHYT_RS35860 - type II secretory pathway component PulF-like protein, at 6,650 to 7,768
_RS35860
BPHYT_RS35865: BPHYT_RS35865 - hypothetical protein, at 8,127 to 8,426
_RS35865
BPHYT_RS35870: BPHYT_RS35870 - hypothetical protein, at 8,499 to 9,779
_RS35870
Position (kb) 8
9 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 7.149 kb on + strand, within BPHYT_RS35860 at 7.149 kb on + strand, within BPHYT_RS35860 at 7.149 kb on + strand, within BPHYT_RS35860 at 7.150 kb on - strand, within BPHYT_RS35860 at 7.150 kb on - strand, within BPHYT_RS35860 at 7.185 kb on - strand, within BPHYT_RS35860 at 7.185 kb on - strand, within BPHYT_RS35860 at 7.185 kb on - strand, within BPHYT_RS35860 at 7.265 kb on + strand, within BPHYT_RS35860 at 7.712 kb on + strand at 7.757 kb on + strand at 7.757 kb on + strand at 7.777 kb on - strand at 7.944 kb on + strand at 7.944 kb on + strand at 7.945 kb on - strand at 7.983 kb on - strand at 8.036 kb on + strand at 8.088 kb on - strand at 8.129 kb on + strand at 8.129 kb on + strand at 8.130 kb on - strand at 8.143 kb on - strand at 8.247 kb on + strand, within BPHYT_RS35865 at 8.247 kb on + strand, within BPHYT_RS35865 at 8.247 kb on + strand, within BPHYT_RS35865 at 8.248 kb on - strand, within BPHYT_RS35865 at 8.396 kb on + strand, within BPHYT_RS35865 at 8.397 kb on - strand at 8.498 kb on - strand at 8.535 kb on - strand at 8.543 kb on + strand at 8.616 kb on + strand at 8.616 kb on + strand at 8.616 kb on + strand at 8.618 kb on + strand at 8.618 kb on + strand at 8.619 kb on - strand at 8.619 kb on - strand at 8.619 kb on - strand at 8.619 kb on - strand at 8.619 kb on - strand at 8.619 kb on - strand at 8.619 kb on - strand at 8.622 kb on + strand at 8.623 kb on - strand at 8.895 kb on + strand, within BPHYT_RS35870 at 8.896 kb on - strand, within BPHYT_RS35870 at 8.935 kb on - strand, within BPHYT_RS35870 at 8.994 kb on + strand, within BPHYT_RS35870 at 8.994 kb on + strand, within BPHYT_RS35870 at 8.994 kb on + strand, within BPHYT_RS35870 at 8.995 kb on - strand, within BPHYT_RS35870 at 8.995 kb on - strand, within BPHYT_RS35870 at 9.102 kb on + strand, within BPHYT_RS35870 at 9.102 kb on + strand, within BPHYT_RS35870 at 9.105 kb on + strand, within BPHYT_RS35870 at 9.106 kb on - strand, within BPHYT_RS35870 at 9.168 kb on - strand, within BPHYT_RS35870 at 9.330 kb on + strand, within BPHYT_RS35870 at 9.330 kb on + strand, within BPHYT_RS35870 at 9.331 kb on - strand, within BPHYT_RS35870 at 9.365 kb on + strand, within BPHYT_RS35870 at 9.365 kb on + strand, within BPHYT_RS35870 at 9.396 kb on + strand, within BPHYT_RS35870 at 9.396 kb on + strand, within BPHYT_RS35870 at 9.397 kb on - strand, within BPHYT_RS35870
Per-strain Table
Position Strand Gene LocusTag Fraction Phenylacetic 5 mM (C) remove 7,149 + BPHYT_RS35860 0.45 -0.1 7,149 + BPHYT_RS35860 0.45 +1.5 7,149 + BPHYT_RS35860 0.45 +1.2 7,150 - BPHYT_RS35860 0.45 -0.3 7,150 - BPHYT_RS35860 0.45 -1.6 7,185 - BPHYT_RS35860 0.48 +0.6 7,185 - BPHYT_RS35860 0.48 -0.3 7,185 - BPHYT_RS35860 0.48 +0.4 7,265 + BPHYT_RS35860 0.55 +0.4 7,712 + -0.5 7,757 + -1.7 7,757 + -0.1 7,777 - -0.3 7,944 + +1.0 7,944 + -0.3 7,945 - +0.4 7,983 - +0.1 8,036 + +0.2 8,088 - +3.1 8,129 + +0.4 8,129 + -0.9 8,130 - -0.1 8,143 - -0.4 8,247 + BPHYT_RS35865 0.40 +0.0 8,247 + BPHYT_RS35865 0.40 +0.4 8,247 + BPHYT_RS35865 0.40 -1.7 8,248 - BPHYT_RS35865 0.40 -0.4 8,396 + BPHYT_RS35865 0.90 -2.2 8,397 - -1.2 8,498 - +0.8 8,535 - -2.2 8,543 + -0.1 8,616 + -1.2 8,616 + -0.1 8,616 + -1.9 8,618 + +0.5 8,618 + -0.4 8,619 - +0.2 8,619 - +0.3 8,619 - +0.3 8,619 - -0.4 8,619 - +0.4 8,619 - -0.2 8,619 - -0.6 8,622 + -0.2 8,623 - +0.0 8,895 + BPHYT_RS35870 0.31 +0.2 8,896 - BPHYT_RS35870 0.31 -0.6 8,935 - BPHYT_RS35870 0.34 -1.5 8,994 + BPHYT_RS35870 0.39 -4.0 8,994 + BPHYT_RS35870 0.39 +1.2 8,994 + BPHYT_RS35870 0.39 -2.6 8,995 - BPHYT_RS35870 0.39 -0.6 8,995 - BPHYT_RS35870 0.39 -0.2 9,102 + BPHYT_RS35870 0.47 -0.3 9,102 + BPHYT_RS35870 0.47 +0.5 9,105 + BPHYT_RS35870 0.47 +0.3 9,106 - BPHYT_RS35870 0.47 -3.2 9,168 - BPHYT_RS35870 0.52 +2.6 9,330 + BPHYT_RS35870 0.65 +0.2 9,330 + BPHYT_RS35870 0.65 -0.8 9,331 - BPHYT_RS35870 0.65 -1.0 9,365 + BPHYT_RS35870 0.68 +0.1 9,365 + BPHYT_RS35870 0.68 +2.6 9,396 + BPHYT_RS35870 0.70 -0.3 9,396 + BPHYT_RS35870 0.70 -0.1 9,397 - BPHYT_RS35870 0.70 -0.1
Or see this region's nucleotide sequence