Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS32760
Experiment: Phenylacetic 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Phenylacetic 5 mM (C) |
---|---|---|---|---|---|
remove | |||||
2,927,183 | + | BPHYT_RS32755 | 0.26 | -0.7 | |
2,927,226 | + | BPHYT_RS32755 | 0.31 | -1.7 | |
2,927,578 | - | BPHYT_RS32755 | 0.64 | +1.1 | |
2,927,634 | + | BPHYT_RS32755 | 0.69 | -0.5 | |
2,927,880 | - | +1.1 | |||
2,927,909 | + | -0.1 | |||
2,928,076 | + | +1.1 | |||
2,928,700 | + | BPHYT_RS32760 | 0.59 | -0.8 | |
2,928,700 | + | BPHYT_RS32760 | 0.59 | -0.1 | |
2,928,788 | + | BPHYT_RS32760 | 0.69 | +0.7 | |
2,928,788 | + | BPHYT_RS32760 | 0.69 | -0.1 | |
2,928,788 | + | BPHYT_RS32760 | 0.69 | +1.1 | |
2,928,788 | + | BPHYT_RS32760 | 0.69 | -0.3 | |
2,928,789 | - | BPHYT_RS32760 | 0.69 | +2.1 | |
2,928,789 | - | BPHYT_RS32760 | 0.69 | +0.1 | |
2,928,948 | - | BPHYT_RS32760 | 0.86 | +0.6 | |
2,929,120 | + | +0.4 | |||
2,929,120 | + | +0.5 | |||
2,929,120 | + | -0.3 | |||
2,929,177 | + | -2.0 | |||
2,929,254 | - | -0.3 | |||
2,929,254 | - | -0.9 | |||
2,929,308 | + | BPHYT_RS32765 | 0.10 | +0.1 | |
2,929,343 | + | BPHYT_RS32765 | 0.12 | -0.8 | |
2,929,344 | - | BPHYT_RS32765 | 0.13 | -1.5 | |
2,930,067 | - | BPHYT_RS32765 | 0.60 | +0.7 |
Or see this region's nucleotide sequence