Experiment: Phenylacetic 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS31715 and BPHYT_RS31720 are separated by 362 nucleotides BPHYT_RS31720 and BPHYT_RS31725 are separated by 190 nucleotides BPHYT_RS31725 and BPHYT_RS31730 are separated by 102 nucleotides
BPHYT_RS31715: BPHYT_RS31715 - branched-chain amino acid ABC transporter substrate-binding protein, at 2,672,337 to 2,673,479
_RS31715
BPHYT_RS31720: BPHYT_RS31720 - LysR family transcriptional regulator, at 2,673,842 to 2,674,771
_RS31720
BPHYT_RS31725: BPHYT_RS31725 - hypothetical protein, at 2,674,962 to 2,675,183
_RS31725
BPHYT_RS31730: BPHYT_RS31730 - aminotransferase class III, at 2,675,286 to 2,676,620
_RS31730
Position (kb) 2673
2674
2675 Strain fitness (log2 ratio) -1
0
1 at 2672.999 kb on - strand, within BPHYT_RS31715 at 2673.525 kb on - strand at 2673.758 kb on - strand at 2673.770 kb on + strand at 2673.957 kb on - strand, within BPHYT_RS31720 at 2674.240 kb on - strand, within BPHYT_RS31720 at 2675.144 kb on - strand, within BPHYT_RS31725 at 2675.462 kb on - strand, within BPHYT_RS31730
Per-strain Table
Position Strand Gene LocusTag Fraction Phenylacetic 5 mM (C) remove 2,672,999 - BPHYT_RS31715 0.58 -0.3 2,673,525 - -0.9 2,673,758 - +0.4 2,673,770 + +1.1 2,673,957 - BPHYT_RS31720 0.12 +1.1 2,674,240 - BPHYT_RS31720 0.43 -0.1 2,675,144 - BPHYT_RS31725 0.82 +0.6 2,675,462 - BPHYT_RS31730 0.13 +0.9
Or see this region's nucleotide sequence