Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS30910

Experiment: Phenylacetic 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS30905 and BPHYT_RS30910 overlap by 4 nucleotidesBPHYT_RS30910 and BPHYT_RS30915 are separated by 197 nucleotidesBPHYT_RS30915 and BPHYT_RS30920 are separated by 255 nucleotides BPHYT_RS30905: BPHYT_RS30905 - histidine kinase, at 2,486,428 to 2,488,089 _RS30905 BPHYT_RS30910: BPHYT_RS30910 - histidine kinase, at 2,488,086 to 2,490,251 _RS30910 BPHYT_RS30915: BPHYT_RS30915 - hypothetical protein, at 2,490,449 to 2,490,790 _RS30915 BPHYT_RS30920: BPHYT_RS30920 - hypothetical protein, at 2,491,046 to 2,491,927 _RS30920 Position (kb) 2488 2489 2490 2491Strain fitness (log2 ratio) -2 -1 0 1 2at 2487.321 kb on - strand, within BPHYT_RS30905at 2487.746 kb on + strand, within BPHYT_RS30905at 2488.148 kb on - strandat 2488.823 kb on + strand, within BPHYT_RS30910at 2489.713 kb on + strand, within BPHYT_RS30910at 2489.714 kb on - strand, within BPHYT_RS30910at 2489.794 kb on + strand, within BPHYT_RS30910at 2489.795 kb on - strand, within BPHYT_RS30910at 2490.682 kb on - strand, within BPHYT_RS30915at 2490.790 kb on + strandat 2490.806 kb on - strandat 2490.806 kb on - strandat 2490.970 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Phenylacetic 5 mM (C)
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2,487,321 - BPHYT_RS30905 0.54 +0.0
2,487,746 + BPHYT_RS30905 0.79 +2.1
2,488,148 - -0.4
2,488,823 + BPHYT_RS30910 0.34 +1.1
2,489,713 + BPHYT_RS30910 0.75 +0.3
2,489,714 - BPHYT_RS30910 0.75 -1.4
2,489,794 + BPHYT_RS30910 0.79 +1.0
2,489,795 - BPHYT_RS30910 0.79 +1.0
2,490,682 - BPHYT_RS30915 0.68 +0.8
2,490,790 + -1.8
2,490,806 - +2.0
2,490,806 - +0.9
2,490,970 - -0.1

Or see this region's nucleotide sequence