Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS27010

Experiment: Phenylacetic 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS27005 and BPHYT_RS27010 are separated by 512 nucleotidesBPHYT_RS27010 and BPHYT_RS27015 are separated by 206 nucleotides BPHYT_RS27005: BPHYT_RS27005 - RNA polymerase sigma54 factor, at 1,636,727 to 1,638,208 _RS27005 BPHYT_RS27010: BPHYT_RS27010 - transporter, at 1,638,721 to 1,639,062 _RS27010 BPHYT_RS27015: BPHYT_RS27015 - aldehyde dehydrogenase, at 1,639,269 to 1,639,721 _RS27015 Position (kb) 1638 1639 1640Strain fitness (log2 ratio) -1 0 1 2 3 4at 1638.191 kb on + strandat 1638.199 kb on + strandat 1638.199 kb on + strandat 1638.200 kb on - strandat 1638.212 kb on - strandat 1638.242 kb on + strandat 1638.246 kb on + strandat 1638.247 kb on - strandat 1638.357 kb on + strandat 1638.358 kb on - strandat 1639.060 kb on + strandat 1639.608 kb on + strand, within BPHYT_RS27015at 1639.726 kb on + strandat 1639.989 kb on + strandat 1639.989 kb on + strandat 1639.989 kb on + strandat 1639.990 kb on - strandat 1639.990 kb on - strandat 1639.992 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Phenylacetic 5 mM (C)
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1,638,191 + +0.4
1,638,199 + -0.6
1,638,199 + +1.1
1,638,200 - +0.9
1,638,212 - -1.4
1,638,242 + -0.3
1,638,246 + -1.3
1,638,247 - -0.2
1,638,357 + -1.3
1,638,358 - +0.4
1,639,060 + -0.4
1,639,608 + BPHYT_RS27015 0.75 +1.7
1,639,726 + +3.9
1,639,989 + +2.0
1,639,989 + -0.4
1,639,989 + +0.6
1,639,990 - -0.6
1,639,990 - +0.6
1,639,992 - +0.1

Or see this region's nucleotide sequence