Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS23100

Experiment: Phenylacetic 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS23095 and BPHYT_RS23100 are separated by 26 nucleotidesBPHYT_RS23100 and BPHYT_RS23105 are separated by 81 nucleotides BPHYT_RS23095: BPHYT_RS23095 - MFS transporter, at 745,127 to 746,359 _RS23095 BPHYT_RS23100: BPHYT_RS23100 - sugar ABC transporter substrate-binding protein, at 746,386 to 747,333 _RS23100 BPHYT_RS23105: BPHYT_RS23105 - DNA polymerase, at 747,415 to 749,790 _RS23105 Position (kb) 746 747 748Strain fitness (log2 ratio) -2 -1 0 1at 745.508 kb on + strand, within BPHYT_RS23095at 745.634 kb on + strand, within BPHYT_RS23095at 745.868 kb on + strand, within BPHYT_RS23095at 745.929 kb on - strand, within BPHYT_RS23095at 746.186 kb on - strand, within BPHYT_RS23095at 746.330 kb on + strandat 746.387 kb on + strandat 746.388 kb on - strandat 746.388 kb on - strandat 746.512 kb on + strand, within BPHYT_RS23100at 746.513 kb on - strand, within BPHYT_RS23100at 747.406 kb on - strandat 747.578 kb on + strandat 747.579 kb on - strandat 747.579 kb on - strandat 747.874 kb on - strand, within BPHYT_RS23105at 747.876 kb on - strand, within BPHYT_RS23105at 748.057 kb on - strand, within BPHYT_RS23105at 748.145 kb on + strand, within BPHYT_RS23105at 748.146 kb on - strand, within BPHYT_RS23105at 748.147 kb on + strand, within BPHYT_RS23105at 748.320 kb on + strand, within BPHYT_RS23105at 748.321 kb on - strand, within BPHYT_RS23105

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Per-strain Table

Position Strand Gene LocusTag Fraction Phenylacetic 5 mM (C)
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745,508 + BPHYT_RS23095 0.31 +0.5
745,634 + BPHYT_RS23095 0.41 -1.0
745,868 + BPHYT_RS23095 0.60 -0.3
745,929 - BPHYT_RS23095 0.65 -0.1
746,186 - BPHYT_RS23095 0.86 -0.5
746,330 + +0.1
746,387 + +0.2
746,388 - +0.6
746,388 - +0.5
746,512 + BPHYT_RS23100 0.13 -1.1
746,513 - BPHYT_RS23100 0.13 -2.1
747,406 - +1.0
747,578 + -0.1
747,579 - +0.7
747,579 - -0.5
747,874 - BPHYT_RS23105 0.19 -1.5
747,876 - BPHYT_RS23105 0.19 +0.1
748,057 - BPHYT_RS23105 0.27 -0.0
748,145 + BPHYT_RS23105 0.31 +0.9
748,146 - BPHYT_RS23105 0.31 +0.6
748,147 + BPHYT_RS23105 0.31 +0.1
748,320 + BPHYT_RS23105 0.38 -0.2
748,321 - BPHYT_RS23105 0.38 +0.5

Or see this region's nucleotide sequence