Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS20750

Experiment: Phenylacetic 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS20745 and BPHYT_RS20750 are separated by 85 nucleotidesBPHYT_RS20750 and BPHYT_RS20755 are separated by 110 nucleotides BPHYT_RS20745: BPHYT_RS20745 - ribose ABC transporter permease, at 215,307 to 216,332 _RS20745 BPHYT_RS20750: BPHYT_RS20750 - LacI family transcriptional regulator, at 216,418 to 217,356 _RS20750 BPHYT_RS20755: BPHYT_RS20755 - fuconate dehydratase, at 217,467 to 218,765 _RS20755 Position (kb) 216 217 218Strain fitness (log2 ratio) -1 0 1at 215.539 kb on + strand, within BPHYT_RS20745at 215.950 kb on - strand, within BPHYT_RS20745at 216.064 kb on + strand, within BPHYT_RS20745at 216.483 kb on - strandat 216.722 kb on + strand, within BPHYT_RS20750at 216.986 kb on - strand, within BPHYT_RS20750at 217.465 kb on - strandat 217.572 kb on + strandat 217.695 kb on - strand, within BPHYT_RS20755

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Per-strain Table

Position Strand Gene LocusTag Fraction Phenylacetic 5 mM (C)
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215,539 + BPHYT_RS20745 0.23 +0.3
215,950 - BPHYT_RS20745 0.63 -0.3
216,064 + BPHYT_RS20745 0.74 -0.9
216,483 - -1.2
216,722 + BPHYT_RS20750 0.32 -1.2
216,986 - BPHYT_RS20750 0.60 -1.2
217,465 - +0.2
217,572 + -0.4
217,695 - BPHYT_RS20755 0.18 +0.1

Or see this region's nucleotide sequence