Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS19635

Experiment: Phenylacetic 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Phenylacetic 5 mM (C)
4,417,156	+		BPHYT_RS19630	0.50	-0.2
4,417,290	+		BPHYT_RS19630	0.70	-0.4
4,417,291	-		BPHYT_RS19630	0.70	+0.4
4,417,306	+		BPHYT_RS19630	0.72	+0.0
4,417,306	+		BPHYT_RS19630	0.72	+0.0
4,417,375	-		BPHYT_RS19630	0.82	-1.3
4,417,498	+				-0.2
4,417,499	-				+0.7
4,417,583	-				-0.1
4,417,583	-				+0.3
4,417,583	-				-0.2
4,417,583	-				+0.7
4,417,614	-				-0.7
4,417,639	+				+0.6
4,417,639	+				+0.1
4,417,667	-				-1.3
4,417,671	+				-0.8
4,417,671	+				+0.1
4,417,671	+				-0.1
4,417,672	-				-0.7
4,417,838	+				+0.3
4,417,838	+				-0.1
4,417,838	+				+0.3
4,417,943	-				-0.5
4,417,979	-				+0.4
4,417,979	-				+2.5
4,417,979	-				+0.2
4,417,979	-				-0.2
4,418,077	-				+0.6
4,418,077	-				-0.0
4,418,096	-				-0.1
4,418,121	+		BPHYT_RS19635	0.11	+0.2
4,418,149	+		BPHYT_RS19635	0.13	+0.3
4,418,152	+		BPHYT_RS19635	0.13	+0.6
4,418,152	+		BPHYT_RS19635	0.13	+1.2
4,418,152	+		BPHYT_RS19635	0.13	+0.3
4,418,233	-		BPHYT_RS19635	0.20	+2.0
4,418,233	-		BPHYT_RS19635	0.20	+5.8
4,418,233	-		BPHYT_RS19635	0.20	+0.1
4,418,244	+		BPHYT_RS19635	0.20	-1.8
4,418,244	+		BPHYT_RS19635	0.20	-1.9
4,418,244	+		BPHYT_RS19635	0.20	+0.4
4,418,247	+		BPHYT_RS19635	0.21	+0.1
4,418,247	+		BPHYT_RS19635	0.21	+0.5
4,418,247	+		BPHYT_RS19635	0.21	+1.2
4,418,247	+		BPHYT_RS19635	0.21	+0.3
4,418,248	-		BPHYT_RS19635	0.21	-0.5
4,418,248	-		BPHYT_RS19635	0.21	+0.9
4,418,248	-		BPHYT_RS19635	0.21	+0.2
4,418,250	+		BPHYT_RS19635	0.21	-1.3
4,418,251	-		BPHYT_RS19635	0.21	-1.7
4,418,423	+		BPHYT_RS19635	0.34	-0.3
4,418,423	+		BPHYT_RS19635	0.34	+1.7
4,418,437	-		BPHYT_RS19635	0.35	+2.3
4,418,497	-		BPHYT_RS19635	0.40	+0.2
4,418,497	-		BPHYT_RS19635	0.40	+0.4
4,418,523	-		BPHYT_RS19635	0.42	+0.2
4,418,527	-		BPHYT_RS19635	0.42	+3.1
4,418,631	-		BPHYT_RS19635	0.50	+1.5
4,418,631	-		BPHYT_RS19635	0.50	+1.0
4,419,081	+		BPHYT_RS19635	0.85	+0.1
4,419,081	+		BPHYT_RS19635	0.85	+0.6
4,419,082	-		BPHYT_RS19635	0.85	+0.1
4,419,155	+				-1.1
4,419,155	+				+0.2
4,419,156	-				+0.3
4,419,241	+				+0.3
4,419,242	-				+0.5
4,419,270	+				+0.8
4,419,270	+				+0.6
4,419,270	+				-1.3
4,419,270	+				+0.1
4,419,270	+				+0.2
4,419,271	-				-0.4
4,419,271	-				+0.0
4,419,271	-				-2.9
4,419,271	-				-0.5
4,419,323	-				+0.7
4,419,323	-				+0.1
4,419,323	-				+0.4
4,419,668	+		BPHYT_RS19640	0.26	+0.2
4,419,669	-		BPHYT_RS19640	0.26	+0.2
4,419,669	-		BPHYT_RS19640	0.26	+0.8
4,419,669	-		BPHYT_RS19640	0.26	-0.5
4,420,091	-		BPHYT_RS19640	0.55	+0.3
4,420,091	-		BPHYT_RS19640	0.55	-1.7
4,420,161	+		BPHYT_RS19640	0.60	-0.3