Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS17865

Experiment: Phenylacetic 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Phenylacetic 5 mM (C)
4,034,917	-		BPHYT_RS17860	0.13	+0.5
4,035,120	+		BPHYT_RS17860	0.42	+0.2
4,035,121	-		BPHYT_RS17860	0.42	-1.4
4,035,192	+		BPHYT_RS17860	0.52	-1.7
4,035,215	-		BPHYT_RS17860	0.56	-2.6
4,035,280	-		BPHYT_RS17860	0.65	-1.3
4,035,280	-		BPHYT_RS17860	0.65	+0.1
4,035,432	+		BPHYT_RS17860	0.86	+0.1
4,035,507	+				+0.0
4,035,507	+				-0.0
4,035,507	+				+0.5
4,035,507	+				-0.5
4,035,507	+				-0.9
4,035,507	+				-0.1
4,035,507	+				+0.1
4,035,507	+				-0.7
4,035,507	+				+0.5
4,035,556	+				-0.8
4,035,557	-				+0.2
4,035,557	-				-2.2
4,035,557	-				+0.5
4,035,557	-				-0.1
4,035,660	-				-0.3
4,035,680	+				+0.8
4,035,680	+				+1.7
4,035,687	-				+0.4
4,035,716	+				-0.4
4,035,801	+		BPHYT_RS17865	0.12	-0.2
4,035,801	+		BPHYT_RS17865	0.12	-1.5
4,035,827	-		BPHYT_RS17865	0.15	-2.9
4,036,089	+		BPHYT_RS17865	0.51	-0.1
4,036,093	-		BPHYT_RS17865	0.52	-1.8
4,036,220	+		BPHYT_RS17865	0.69	+0.2
4,036,221	-		BPHYT_RS17865	0.69	+0.9
4,036,223	+		BPHYT_RS17865	0.70	-1.4
4,036,224	-		BPHYT_RS17865	0.70	+3.8
4,036,229	+		BPHYT_RS17865	0.71	+0.2
4,036,230	-		BPHYT_RS17865	0.71	-0.5
4,036,266	+		BPHYT_RS17865	0.76	+0.4
4,036,267	-		BPHYT_RS17865	0.76	-0.1
4,036,267	-		BPHYT_RS17865	0.76	-2.4
4,036,297	+		BPHYT_RS17865	0.80	-1.7
4,036,308	+		BPHYT_RS17865	0.81	-1.5
4,036,416	+				-0.0
4,036,471	+		BPHYT_RS17870	0.12	+0.1
4,036,471	+		BPHYT_RS17870	0.12	-1.3
4,036,471	+		BPHYT_RS17870	0.12	-0.8
4,036,471	+		BPHYT_RS17870	0.12	+0.6
4,036,472	-		BPHYT_RS17870	0.12	+1.1
4,036,472	-		BPHYT_RS17870	0.12	-0.7
4,036,477	-		BPHYT_RS17870	0.14	+1.5
4,036,637	+		BPHYT_RS17870	0.73	+1.0
4,036,637	+		BPHYT_RS17870	0.73	+0.2
4,036,737	-				-0.8
4,036,810	-				+0.9
4,036,863	+		BPHYT_RS17875	0.19	+0.7
4,036,897	-		BPHYT_RS17875	0.28	-0.9
4,036,919	+		BPHYT_RS17875	0.33	-1.4
4,036,920	-		BPHYT_RS17875	0.34	-2.9
4,036,992	+		BPHYT_RS17875	0.52	+0.8
4,036,993	-		BPHYT_RS17875	0.53	+2.6
4,037,083	+		BPHYT_RS17875	0.76	-0.2
4,037,083	+		BPHYT_RS17875	0.76	-0.8
4,037,084	-		BPHYT_RS17875	0.77	-2.1
4,037,193	-				-0.8
4,037,241	-				+0.1
4,037,242	+				+0.7
4,037,243	-				+0.3
4,037,243	-				+0.3
4,037,329	+				+1.2