Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS17340

Experiment: Phenylacetic 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Phenylacetic 5 mM (C)
3,929,791	-				-0.2
3,929,791	-				-1.0
3,929,791	-				-1.3
3,929,791	-				-0.2
3,929,793	+				+1.4
3,929,793	+				+0.7
3,929,840	-				-2.9
3,929,840	-				-3.0
3,929,840	-				-2.4
3,930,038	+		BPHYT_RS17335	0.32	-3.3
3,930,038	+		BPHYT_RS17335	0.32	-3.3
3,930,038	+		BPHYT_RS17335	0.32	-2.1
3,930,274	+		BPHYT_RS17335	0.62	-2.9
3,930,283	+		BPHYT_RS17335	0.63	-1.8
3,930,321	+		BPHYT_RS17335	0.68	-3.9
3,930,321	+		BPHYT_RS17335	0.68	-1.8
3,930,321	+		BPHYT_RS17335	0.68	-0.9
3,930,333	+		BPHYT_RS17335	0.70	+2.4
3,930,333	+		BPHYT_RS17335	0.70	-1.1
3,930,334	-		BPHYT_RS17335	0.70	-4.1
3,930,343	+		BPHYT_RS17335	0.71	+1.4
3,930,343	+		BPHYT_RS17335	0.71	+0.1
3,930,343	+		BPHYT_RS17335	0.71	-2.1
3,930,344	-		BPHYT_RS17335	0.71	+1.4
3,930,345	+		BPHYT_RS17335	0.71	-4.2
3,930,346	-		BPHYT_RS17335	0.71	-2.8
3,930,346	-		BPHYT_RS17335	0.71	-2.9
3,930,346	-		BPHYT_RS17335	0.71	-3.8
3,930,351	+		BPHYT_RS17335	0.72	-3.2
3,930,351	+		BPHYT_RS17335	0.72	-2.4
3,930,351	+		BPHYT_RS17335	0.72	-3.8
3,930,351	+		BPHYT_RS17335	0.72	-1.3
3,930,352	-		BPHYT_RS17335	0.72	-1.8
3,930,352	-		BPHYT_RS17335	0.72	-5.0
3,930,352	-		BPHYT_RS17335	0.72	-3.7
3,930,562	-				-4.2
3,930,579	-				-1.0
3,930,584	+				-3.8
3,930,623	+				-0.5
3,930,623	+				+0.9
3,930,623	+				-1.1
3,930,624	-				-0.6
3,930,624	-				-2.3
3,930,624	-				-1.9
3,930,624	-				-2.2
3,930,624	-				-2.9
3,930,626	+				-0.7
3,930,626	+				-1.9
3,930,627	-				-3.2
3,930,627	-				-2.0
3,930,633	-				-4.2
3,930,662	+				-3.1
3,930,817	+				-3.5
3,930,818	-				-1.9
3,930,884	+		BPHYT_RS17340	0.10	-1.9
3,930,884	+		BPHYT_RS17340	0.10	-3.5
3,931,096	+		BPHYT_RS17340	0.23	-1.9
3,931,189	+		BPHYT_RS17340	0.28	-1.7
3,931,189	+		BPHYT_RS17340	0.28	-2.5
3,931,280	-		BPHYT_RS17340	0.34	-0.8
3,931,434	-		BPHYT_RS17340	0.43	-0.6
3,931,434	-		BPHYT_RS17340	0.43	-1.8
3,931,434	-		BPHYT_RS17340	0.43	-1.8
3,931,717	+		BPHYT_RS17340	0.59	-2.0
3,931,718	-		BPHYT_RS17340	0.59	+1.4
3,931,753	+		BPHYT_RS17340	0.62	-2.4
3,931,753	+		BPHYT_RS17340	0.62	-4.9
3,931,754	-		BPHYT_RS17340	0.62	-5.0
3,931,989	-		BPHYT_RS17340	0.75	-3.3
3,932,155	+		BPHYT_RS17340	0.85	-4.1
3,932,413	+				-2.7
3,932,413	+				-3.4
3,932,413	+				-1.8
3,932,414	-				-2.0
3,932,414	-				-1.6
3,932,436	+				-4.5
3,932,476	+				-3.3
3,932,476	+				-2.4
3,932,477	-				-3.7
3,932,477	-				-2.8
3,932,677	+		BPHYT_RS17345	0.12	-3.6
3,932,677	+		BPHYT_RS17345	0.12	-5.7
3,932,691	+		BPHYT_RS17345	0.13	-4.6
3,932,691	+		BPHYT_RS17345	0.13	-2.2
3,932,691	+		BPHYT_RS17345	0.13	-3.4
3,932,691	+		BPHYT_RS17345	0.13	-3.5
3,932,924	+		BPHYT_RS17345	0.33	-3.2
3,932,924	+		BPHYT_RS17345	0.33	-3.4
3,932,924	+		BPHYT_RS17345	0.33	-3.6
3,932,948	+		BPHYT_RS17345	0.35	-5.5
3,932,949	-		BPHYT_RS17345	0.35	-3.7
3,932,952	+		BPHYT_RS17345	0.35	-4.2
3,932,953	-		BPHYT_RS17345	0.35	-0.9
3,933,004	-		BPHYT_RS17345	0.39	-1.8
3,933,242	+		BPHYT_RS17345	0.59	-0.9