Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS15685

Experiment: Phenylacetic 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS15680 and BPHYT_RS15685 overlap by 1 nucleotidesBPHYT_RS15685 and BPHYT_RS15690 are separated by 111 nucleotides BPHYT_RS15680: BPHYT_RS15680 - isoleucine--tRNA ligase, at 3,555,664 to 3,558,501 _RS15680 BPHYT_RS15685: BPHYT_RS15685 - lipoprotein signal peptidase, at 3,558,501 to 3,559,019 _RS15685 BPHYT_RS15690: BPHYT_RS15690 - phosphopantothenate synthase, at 3,559,131 to 3,560,345 _RS15690 Position (kb) 3558 3559 3560Strain fitness (log2 ratio) -2 -1 0 1at 3558.499 kb on + strandat 3559.058 kb on + strandat 3559.058 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Phenylacetic 5 mM (C)
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3,558,499 + -2.5
3,559,058 + +0.6
3,559,058 + -0.6

Or see this region's nucleotide sequence