Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS15505

Experiment: Phenylacetic 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Phenylacetic 5 mM (C)
3,516,498	-		BPHYT_RS15500	0.46	-0.6
3,516,893	+		BPHYT_RS15500	0.75	+0.6
3,516,893	+		BPHYT_RS15500	0.75	-1.0
3,516,893	+		BPHYT_RS15500	0.75	-0.8
3,516,894	-		BPHYT_RS15500	0.75	-1.0
3,516,894	-		BPHYT_RS15500	0.75	-0.4
3,516,935	+		BPHYT_RS15500	0.78	-1.1
3,516,992	+		BPHYT_RS15500	0.82	-1.3
3,516,992	+		BPHYT_RS15500	0.82	-0.6
3,516,993	-		BPHYT_RS15500	0.82	-0.2
3,516,993	-		BPHYT_RS15500	0.82	-1.7
3,517,186	-				-0.3
3,517,255	+				-1.3
3,517,256	-				+0.1
3,517,332	-				+0.1
3,517,335	+				-2.2
3,517,335	+				-1.9
3,517,413	+				+0.7
3,517,413	+				-0.1
3,517,413	+				-0.7
3,517,413	+				+0.5
3,517,414	-				+0.0
3,517,651	+		BPHYT_RS15505	0.20	-0.5
3,517,651	+		BPHYT_RS15505	0.20	+1.6
3,517,652	-		BPHYT_RS15505	0.20	+0.4
3,517,652	-		BPHYT_RS15505	0.20	+0.2
3,517,844	+		BPHYT_RS15505	0.39	-0.2
3,518,015	+		BPHYT_RS15505	0.56	-1.6
3,518,015	+		BPHYT_RS15505	0.56	-0.8
3,518,016	-		BPHYT_RS15505	0.56	+0.0
3,518,276	+		BPHYT_RS15505	0.82	+1.6
3,518,276	+		BPHYT_RS15505	0.82	+0.0
3,518,277	-		BPHYT_RS15505	0.82	+0.4
3,518,467	-				-0.6
3,518,581	-				-0.9
3,518,581	-				+0.2
3,518,582	+				+1.5
3,518,739	-		BPHYT_RS15510	0.13	+0.2
3,518,739	-		BPHYT_RS15510	0.13	+0.8
3,518,739	-		BPHYT_RS15510	0.13	+0.2
3,518,739	-		BPHYT_RS15510	0.13	-0.3
3,518,740	+		BPHYT_RS15510	0.13	-0.5
3,518,741	-		BPHYT_RS15510	0.13	+0.3
3,518,804	+		BPHYT_RS15510	0.17	-0.3
3,519,146	+		BPHYT_RS15510	0.37	-0.6
3,519,146	+		BPHYT_RS15510	0.37	+0.6
3,519,147	-		BPHYT_RS15510	0.37	+0.3
3,519,218	+		BPHYT_RS15510	0.41	-0.4
3,519,219	-		BPHYT_RS15510	0.41	+0.7
3,519,219	-		BPHYT_RS15510	0.41	-0.2