Experiment: Phenylacetic 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS13200 and BPHYT_RS13205 are separated by 40 nucleotides BPHYT_RS13205 and BPHYT_RS13210 are separated by 30 nucleotides BPHYT_RS13210 and BPHYT_RS13215 are separated by 440 nucleotides
BPHYT_RS13200: BPHYT_RS13200 - molybdopterin binding oxidoreductase, at 3,012,230 to 3,013,021
_RS13200
BPHYT_RS13205: BPHYT_RS13205 - cytochrome B561, at 3,013,062 to 3,013,703
_RS13205
BPHYT_RS13210: BPHYT_RS13210 - hypothetical protein, at 3,013,734 to 3,014,579
_RS13210
BPHYT_RS13215: BPHYT_RS13215 - elongation factor GreAB, at 3,015,020 to 3,015,430
_RS13215
Position (kb)
3013
3014
3015 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 3013.304 kb on + strand, within BPHYT_RS13205 at 3014.178 kb on - strand, within BPHYT_RS13210 at 3014.215 kb on + strand, within BPHYT_RS13210 at 3014.216 kb on - strand, within BPHYT_RS13210 at 3014.400 kb on - strand, within BPHYT_RS13210 at 3014.419 kb on + strand, within BPHYT_RS13210 at 3014.420 kb on - strand, within BPHYT_RS13210 at 3014.701 kb on + strand at 3014.710 kb on + strand at 3014.919 kb on + strand at 3015.395 kb on + strand at 3015.428 kb on + strand at 3015.428 kb on + strand at 3015.428 kb on + strand at 3015.429 kb on - strand at 3015.494 kb on + strand at 3015.495 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Phenylacetic 5 mM (C) remove 3,013,304 + BPHYT_RS13205 0.38 -0.5 3,014,178 - BPHYT_RS13210 0.52 +0.4 3,014,215 + BPHYT_RS13210 0.57 +0.1 3,014,216 - BPHYT_RS13210 0.57 +0.4 3,014,400 - BPHYT_RS13210 0.79 -1.5 3,014,419 + BPHYT_RS13210 0.81 +0.3 3,014,420 - BPHYT_RS13210 0.81 +4.1 3,014,701 + -4.0 3,014,710 + -1.2 3,014,919 + -0.9 3,015,395 + +1.2 3,015,428 + +0.8 3,015,428 + -0.3 3,015,428 + -0.0 3,015,429 - +0.4 3,015,494 + +0.2 3,015,495 - +0.1
Or see this region's nucleotide sequence