Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS13195

Experiment: Phenylacetic 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS13190 and BPHYT_RS13195 are separated by 364 nucleotidesBPHYT_RS13195 and BPHYT_RS13200 are separated by 117 nucleotidesBPHYT_RS13200 and BPHYT_RS13205 are separated by 40 nucleotides BPHYT_RS13190: BPHYT_RS13190 - membrane protein, at 3,010,573 to 3,011,502 _RS13190 BPHYT_RS13195: BPHYT_RS13195 - hypothetical protein, at 3,011,867 to 3,012,112 _RS13195 BPHYT_RS13200: BPHYT_RS13200 - molybdopterin binding oxidoreductase, at 3,012,230 to 3,013,021 _RS13200 BPHYT_RS13205: BPHYT_RS13205 - cytochrome B561, at 3,013,062 to 3,013,703 _RS13205 Position (kb) 3011 3012 3013Strain fitness (log2 ratio) -2 -1 0 1at 3011.308 kb on + strand, within BPHYT_RS13190at 3011.384 kb on + strand, within BPHYT_RS13190at 3011.731 kb on + strandat 3011.732 kb on - strandat 3012.153 kb on - strandat 3012.454 kb on - strand, within BPHYT_RS13200at 3012.483 kb on + strand, within BPHYT_RS13200

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Per-strain Table

Position Strand Gene LocusTag Fraction Phenylacetic 5 mM (C)
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3,011,308 + BPHYT_RS13190 0.79 -0.1
3,011,384 + BPHYT_RS13190 0.87 +0.2
3,011,731 + +0.4
3,011,732 - +0.9
3,012,153 - -0.1
3,012,454 - BPHYT_RS13200 0.28 -2.2
3,012,483 + BPHYT_RS13200 0.32 +0.1

Or see this region's nucleotide sequence