Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS12470

Experiment: Phenylacetic 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Phenylacetic 5 mM (C)
2,841,109	+				+1.0
2,841,383	+		BPHYT_RS12465	0.36	+3.0
2,841,383	+		BPHYT_RS12465	0.36	-1.4
2,841,383	+		BPHYT_RS12465	0.36	-4.7
2,841,384	-		BPHYT_RS12465	0.36	-1.4
2,841,989	-				+2.0
2,842,014	-				+0.1
2,842,112	+				+2.5
2,842,112	+				+0.5
2,842,113	-				-0.6
2,842,247	+		BPHYT_RS12470	0.12	-0.0
2,842,248	-		BPHYT_RS12470	0.12	+1.0
2,842,306	+		BPHYT_RS12470	0.16	+0.9
2,842,380	-		BPHYT_RS12470	0.22	-0.0
2,842,425	-		BPHYT_RS12470	0.25	+0.2
2,842,631	+		BPHYT_RS12470	0.41	+1.0
2,842,631	+		BPHYT_RS12470	0.41	+0.3
2,842,632	-		BPHYT_RS12470	0.41	+0.4
2,842,728	-		BPHYT_RS12470	0.49	+0.4
2,842,728	-		BPHYT_RS12470	0.49	-0.3
2,843,012	+		BPHYT_RS12470	0.70	-0.5
2,843,012	+		BPHYT_RS12470	0.70	+0.1
2,843,051	-		BPHYT_RS12470	0.73	-0.1
2,843,060	+		BPHYT_RS12470	0.74	+0.1
2,843,060	+		BPHYT_RS12470	0.74	-0.3
2,843,060	+		BPHYT_RS12470	0.74	-1.2
2,843,060	+		BPHYT_RS12470	0.74	-0.0
2,843,061	-		BPHYT_RS12470	0.74	+0.3
2,843,061	-		BPHYT_RS12470	0.74	-0.7
2,843,061	-		BPHYT_RS12470	0.74	+0.3
2,843,075	+		BPHYT_RS12470	0.75	+0.1
2,843,459	+				+0.6
2,843,545	+				+0.0
2,843,613	+				+0.8
2,843,614	-				+0.4
2,843,655	+				+0.9
2,843,674	-				+1.1
2,843,799	+				+0.8
2,843,958	+		BPHYT_RS12475	0.15	-1.9
2,843,958	+		BPHYT_RS12475	0.15	-0.0
2,843,959	-		BPHYT_RS12475	0.15	-0.5
2,844,384	+		BPHYT_RS12475	0.31	-0.1
2,844,385	-		BPHYT_RS12475	0.31	-0.0
2,844,386	+		BPHYT_RS12475	0.31	-0.5
2,844,387	-		BPHYT_RS12475	0.31	-0.7