Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS05805

Experiment: Phenylacetic 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Phenylacetic 5 mM (C)
1,317,397	+		BPHYT_RS05795	0.16	-0.1
1,317,652	-		BPHYT_RS05795	0.87	-0.3
1,317,662	+		BPHYT_RS05795	0.89	-1.6
1,317,663	-		BPHYT_RS05795	0.90	+0.8
1,317,908	-		BPHYT_RS05800	0.35	-1.4
1,317,944	-		BPHYT_RS05800	0.48	-3.3
1,317,958	+		BPHYT_RS05800	0.53	-0.7
1,318,144	-				-1.1
1,318,144	-				-0.5
1,318,146	+				+3.9
1,318,147	-				-0.4
1,318,497	+				+2.4
1,318,498	-				+0.5
1,319,309	-		BPHYT_RS05805	0.23	-1.7
1,319,476	+		BPHYT_RS05805	0.26	-0.4
1,319,476	+		BPHYT_RS05805	0.26	-1.2
1,319,477	-		BPHYT_RS05805	0.26	-0.0
1,319,567	-		BPHYT_RS05805	0.28	+0.2
1,319,573	-		BPHYT_RS05805	0.28	-0.1
1,319,981	-		BPHYT_RS05805	0.36	-1.0
1,320,043	+		BPHYT_RS05805	0.37	+0.2
1,320,127	-		BPHYT_RS05805	0.39	+0.1
1,320,260	-		BPHYT_RS05805	0.42	-0.2
1,320,337	-		BPHYT_RS05805	0.43	+0.9
1,320,352	-		BPHYT_RS05805	0.44	+0.6
1,320,726	+		BPHYT_RS05805	0.51	-0.6
1,321,153	+		BPHYT_RS05805	0.59	-0.3
1,321,154	-		BPHYT_RS05805	0.59	+1.2
1,321,154	-		BPHYT_RS05805	0.59	-0.2
1,321,176	+		BPHYT_RS05805	0.60	-1.2
1,321,177	-		BPHYT_RS05805	0.60	-0.0
1,321,205	-		BPHYT_RS05805	0.60	+2.5
1,321,436	-		BPHYT_RS05805	0.65	-1.6
1,321,628	+		BPHYT_RS05805	0.68	-0.2
1,321,687	+		BPHYT_RS05805	0.70	-0.1
1,321,783	+		BPHYT_RS05805	0.71	-0.3
1,321,783	+		BPHYT_RS05805	0.71	+0.1
1,321,794	-		BPHYT_RS05805	0.72	+1.2
1,322,049	-		BPHYT_RS05805	0.77	+0.4
1,322,252	-		BPHYT_RS05805	0.81	+0.3
1,322,596	+		BPHYT_RS05805	0.87	-0.1
1,322,713	+		BPHYT_RS05805	0.90	-0.4
1,322,713	+				+0.2
1,322,773	+				-0.4
1,322,947	+				+0.2
1,323,296	+				-0.3
1,323,296	+				+2.8
1,323,296	+				-1.0
1,323,296	+				-0.4
1,323,296	+				+0.2
1,323,303	+				-0.2
1,323,556	-		BPHYT_RS05810	0.21	+1.8
1,323,808	-		BPHYT_RS05810	0.38	+0.2
1,323,847	-		BPHYT_RS05810	0.40	+0.6
1,323,882	+		BPHYT_RS05810	0.43	-0.6