Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS04725

Experiment: Phenylacetic 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Phenylacetic 5 mM (C)
1,091,094	-		BPHYT_RS04720	0.26	+0.7
1,091,201	+		BPHYT_RS04720	0.37	+1.2
1,091,202	-		BPHYT_RS04720	0.37	-1.6
1,091,327	+		BPHYT_RS04720	0.51	+0.3
1,091,328	-		BPHYT_RS04720	0.51	-2.4
1,091,328	-		BPHYT_RS04720	0.51	-3.1
1,091,328	-		BPHYT_RS04720	0.51	-2.1
1,091,475	-		BPHYT_RS04720	0.66	+1.2
1,091,850	-				-2.6
1,091,882	-				-2.3
1,091,887	+				+0.4
1,091,887	+				-2.5
1,091,887	+				-1.6
1,091,896	+				+0.6
1,091,918	-				-0.8
1,092,021	-				-1.8
1,092,029	+				-2.9
1,092,030	-				-1.9
1,092,149	+				-3.6
1,092,165	-				-4.3
1,092,165	-				-1.9
1,092,254	+		BPHYT_RS04725	0.14	-5.2
1,092,287	+		BPHYT_RS04725	0.16	-4.8
1,092,573	-		BPHYT_RS04725	0.33	-1.8
1,092,749	+		BPHYT_RS04725	0.44	-4.0
1,092,749	+		BPHYT_RS04725	0.44	-5.0
1,092,885	-		BPHYT_RS04725	0.52	-5.0
1,092,982	+		BPHYT_RS04725	0.58	-3.4
1,092,982	+		BPHYT_RS04725	0.58	-2.5
1,093,340	+		BPHYT_RS04725	0.79	-2.9
1,093,346	+		BPHYT_RS04725	0.79	-5.3
1,093,347	-		BPHYT_RS04725	0.80	-4.6
1,093,347	-		BPHYT_RS04725	0.80	-2.2
1,093,385	-		BPHYT_RS04725	0.82	-4.8
1,093,622	+				-3.1
1,093,662	-				-4.9
1,093,721	+				-4.1
1,093,721	+				-3.5
1,093,721	+				-4.9
1,093,722	-				-4.6
1,094,034	+		BPHYT_RS04730	0.59	-0.9
1,094,034	+		BPHYT_RS04730	0.59	-2.8
1,094,035	-		BPHYT_RS04730	0.60	-4.8
1,094,178	+		BPHYT_RS04730	0.86	-4.1