Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS04600

Experiment: Phenylacetic 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Phenylacetic 5 mM (C)
1,063,571	-		BPHYT_RS04590	0.57	+0.7
1,063,646	-		BPHYT_RS04590	0.65	+3.8
1,064,318	-		BPHYT_RS04595	0.69	-3.4
1,064,363	+		BPHYT_RS04595	0.78	-2.1
1,064,364	-		BPHYT_RS04595	0.78	-0.5
1,064,520	-				-0.4
1,064,523	-				+1.5
1,064,540	+				-0.8
1,064,540	+				+1.1
1,064,540	+				-0.4
1,064,541	-				+0.0
1,064,541	-				+0.1
1,064,541	-				+2.8
1,064,544	+				+0.0
1,064,545	-				+0.8
1,064,724	+		BPHYT_RS04600	0.12	+0.1
1,064,744	+		BPHYT_RS04600	0.13	+0.5
1,064,744	+		BPHYT_RS04600	0.13	-3.0
1,064,744	+		BPHYT_RS04600	0.13	-0.4
1,064,745	-		BPHYT_RS04600	0.13	-2.1
1,064,745	-		BPHYT_RS04600	0.13	-1.1
1,064,745	-		BPHYT_RS04600	0.13	+0.7
1,064,745	-		BPHYT_RS04600	0.13	+0.3
1,064,783	+		BPHYT_RS04600	0.15	-0.0
1,064,784	-		BPHYT_RS04600	0.15	+1.0
1,065,083	+		BPHYT_RS04600	0.31	-0.5
1,065,295	-		BPHYT_RS04600	0.42	+0.7
1,065,641	+		BPHYT_RS04600	0.60	+0.5
1,065,642	-		BPHYT_RS04600	0.61	-2.1
1,065,737	-		BPHYT_RS04600	0.66	+1.0
1,065,750	-		BPHYT_RS04600	0.66	+0.3
1,065,819	-		BPHYT_RS04600	0.70	+0.1
1,065,819	-		BPHYT_RS04600	0.70	+0.3
1,066,013	+		BPHYT_RS04600	0.80	-0.2
1,066,014	-		BPHYT_RS04600	0.80	-1.7
1,066,291	-				-0.6
1,066,642	-		BPHYT_RS04605	0.24	+0.3
1,066,642	-		BPHYT_RS04605	0.24	+0.5
1,066,652	+		BPHYT_RS04605	0.25	+0.3
1,066,740	+		BPHYT_RS04605	0.34	+2.8
1,066,740	+		BPHYT_RS04605	0.34	+1.7
1,066,792	+		BPHYT_RS04605	0.39	+1.5
1,066,867	+		BPHYT_RS04605	0.46	-0.1
1,066,867	+		BPHYT_RS04605	0.46	-0.1
1,066,867	+		BPHYT_RS04605	0.46	+0.5
1,066,868	-		BPHYT_RS04605	0.46	-0.2
1,067,078	-		BPHYT_RS04605	0.66	+0.8
1,067,078	-		BPHYT_RS04605	0.66	+0.2
1,067,078	-		BPHYT_RS04605	0.66	+0.7
1,067,184	+		BPHYT_RS04605	0.76	-0.3
1,067,194	+		BPHYT_RS04605	0.77	+0.3
1,067,195	-		BPHYT_RS04605	0.77	-1.6
1,067,195	-		BPHYT_RS04605	0.77	-0.3