Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_004958

Experiment: Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days
1,183,518	+				+0.2
1,183,555	+				+0.5
1,183,555	+				-0.1
1,183,737	-		ABIE53_004957	0.22	+1.6
1,183,737	-		ABIE53_004957	0.22	+0.2
1,183,776	+		ABIE53_004957	0.27	-2.1
1,183,863	-		ABIE53_004957	0.37	+0.5
1,183,905	+		ABIE53_004957	0.41	+2.0
1,183,905	+		ABIE53_004957	0.41	-2.3
1,183,905	+		ABIE53_004957	0.41	-0.7
1,183,906	-		ABIE53_004957	0.41	+0.2
1,183,906	-		ABIE53_004957	0.41	+0.9
1,183,908	-		ABIE53_004957	0.42	+2.3
1,184,013	+		ABIE53_004957	0.53	-0.8
1,184,014	-		ABIE53_004957	0.53	+0.6
1,184,102	+		ABIE53_004957	0.63	-1.5
1,184,102	+		ABIE53_004957	0.63	+0.8
1,184,103	-		ABIE53_004957	0.63	-1.6
1,184,247	+		ABIE53_004957	0.80	-2.0
1,184,247	+		ABIE53_004957	0.80	+0.9
1,184,247	+		ABIE53_004957	0.80	-2.7
1,184,248	-		ABIE53_004957	0.80	+2.7
1,184,248	-		ABIE53_004957	0.80	-0.7
1,184,275	-		ABIE53_004957	0.83	+2.7
1,184,430	+				+0.2
1,184,447	+				-0.5
1,184,577	+		ABIE53_004958	0.16	-0.6
1,184,578	-		ABIE53_004958	0.16	-1.1
1,184,580	+		ABIE53_004958	0.16	-1.3
1,184,581	-		ABIE53_004958	0.16	-1.3
1,184,581	-		ABIE53_004958	0.16	-1.6
1,184,581	-		ABIE53_004958	0.16	-0.6
1,184,602	+		ABIE53_004958	0.19	+0.1
1,184,602	+		ABIE53_004958	0.19	-0.7
1,184,602	+		ABIE53_004958	0.19	-1.2
1,184,602	+		ABIE53_004958	0.19	-1.2
1,184,602	+		ABIE53_004958	0.19	-1.9
1,184,603	-		ABIE53_004958	0.19	-0.6
1,184,604	+		ABIE53_004958	0.19	+0.5
1,184,604	+		ABIE53_004958	0.19	+0.4
1,184,604	+		ABIE53_004958	0.19	-2.6
1,184,604	+		ABIE53_004958	0.19	+0.2
1,184,604	+		ABIE53_004958	0.19	+2.1
1,184,604	+		ABIE53_004958	0.19	+0.5
1,184,604	+		ABIE53_004958	0.19	+0.2
1,184,605	-		ABIE53_004958	0.19	-2.1
1,184,605	-		ABIE53_004958	0.19	-1.6
1,184,605	-		ABIE53_004958	0.19	+1.6
1,184,788	+		ABIE53_004958	0.42	-1.3
1,184,788	+		ABIE53_004958	0.42	-0.6
1,184,788	+		ABIE53_004958	0.42	+0.1
1,184,788	+		ABIE53_004958	0.42	-1.8
1,184,789	-		ABIE53_004958	0.42	+0.4
1,184,816	+		ABIE53_004958	0.46	-3.6
1,184,816	+		ABIE53_004958	0.46	-0.9
1,184,816	+		ABIE53_004958	0.46	+0.4
1,184,816	+		ABIE53_004958	0.46	-1.6
1,184,816	+		ABIE53_004958	0.46	+0.9
1,184,816	+		ABIE53_004958	0.46	-3.9
1,184,817	-		ABIE53_004958	0.46	+0.1
1,184,817	-		ABIE53_004958	0.46	+0.3
1,184,817	-		ABIE53_004958	0.46	-0.2
1,184,817	-		ABIE53_004958	0.46	-0.2
1,184,852	+		ABIE53_004958	0.50	+0.5
1,184,852	+		ABIE53_004958	0.50	-1.4
1,184,852	+		ABIE53_004958	0.50	-0.8
1,184,853	-		ABIE53_004958	0.50	-0.1
1,184,860	+		ABIE53_004958	0.51	-0.7
1,184,870	-		ABIE53_004958	0.52	-2.6
1,184,974	+		ABIE53_004958	0.65	-3.1
1,185,046	+		ABIE53_004958	0.74	-0.9
1,185,047	-		ABIE53_004958	0.75	-2.4
1,185,047	-		ABIE53_004958	0.75	+0.2
1,185,047	-		ABIE53_004958	0.75	+0.5
1,185,047	-		ABIE53_004958	0.75	+1.1
1,185,047	-		ABIE53_004958	0.75	-0.1
1,185,076	+		ABIE53_004958	0.78	+0.2
1,185,076	+		ABIE53_004958	0.78	-1.3
1,185,076	+		ABIE53_004958	0.78	-0.1
1,185,076	+		ABIE53_004958	0.78	+0.2
1,185,076	+		ABIE53_004958	0.78	-0.9
1,185,076	+		ABIE53_004958	0.78	-1.1
1,185,077	-		ABIE53_004958	0.78	-2.1
1,185,077	-		ABIE53_004958	0.78	+1.5
1,185,077	-		ABIE53_004958	0.78	-0.8
1,185,077	-		ABIE53_004958	0.78	-2.1
1,185,077	-		ABIE53_004958	0.78	-1.2
1,185,077	-		ABIE53_004958	0.78	-1.1
1,185,077	-		ABIE53_004958	0.78	-0.3
1,185,077	-		ABIE53_004958	0.78	+0.5
1,185,077	-		ABIE53_004958	0.78	+1.3
1,185,077	-		ABIE53_004958	0.78	+0.9
1,185,086	-		ABIE53_004958	0.79	+0.2
1,185,094	+		ABIE53_004958	0.80	-1.3
1,185,094	+		ABIE53_004958	0.80	-0.3
1,185,094	+		ABIE53_004958	0.80	-0.3
1,185,094	+		ABIE53_004958	0.80	-1.1
1,185,094	+		ABIE53_004958	0.80	-2.5
1,185,094	+		ABIE53_004958	0.80	+1.0
1,185,094	+		ABIE53_004958	0.80	-0.3
1,185,095	-		ABIE53_004958	0.81	-0.8
1,185,095	-		ABIE53_004958	0.81	-0.9
1,185,095	-		ABIE53_004958	0.81	-0.6
1,185,097	+		ABIE53_004958	0.81	-0.6
1,185,098	-		ABIE53_004958	0.81	-0.5
1,185,098	-		ABIE53_004958	0.81	-0.6
1,185,228	+				-0.3
1,185,228	+				-1.0
1,185,228	+				-0.1
1,185,228	+				-0.6
1,185,229	-				-0.9
1,185,229	-				-1.4
1,185,229	-				-0.3
1,185,229	-				-1.4
1,185,229	-				-0.6
1,185,275	-				-2.5
1,185,275	-				-0.8
1,185,388	+				-1.0
1,185,388	+				-1.3
1,185,388	+				-0.7
1,185,388	+				-1.0
1,185,388	+				+0.5
1,185,389	-				-0.6
1,185,389	-				+3.7
1,185,411	+				-2.2
1,185,411	+				+4.0
1,185,412	-				-0.8
1,185,412	-				+0.8
1,185,421	+				-1.1
1,185,421	+				-2.4
1,185,422	-				+1.0
1,185,422	-				-2.3
1,185,455	+				-1.6
1,185,464	+				-1.2
1,185,464	+				+0.6
1,185,464	+				-0.3
1,185,464	+				-1.5
1,185,464	+				-0.9
1,185,464	+				+0.2
1,185,465	-				-0.1
1,185,465	-				-2.3
1,185,465	-				+3.5
1,185,465	-				-0.6
1,185,465	-				+0.3
1,185,621	+		ABIE53_004959	0.30	+1.5
1,185,621	+		ABIE53_004959	0.30	+1.5
1,185,621	+		ABIE53_004959	0.30	+0.9
1,185,621	+		ABIE53_004959	0.30	-1.3
1,185,657	+		ABIE53_004959	0.40	+1.7
1,185,657	+		ABIE53_004959	0.40	-1.1
1,185,657	+		ABIE53_004959	0.40	-0.3
1,185,657	+		ABIE53_004959	0.40	-2.8
1,185,657	+		ABIE53_004959	0.40	+1.1
1,185,657	+		ABIE53_004959	0.40	+2.8
1,185,658	-		ABIE53_004959	0.40	+0.2
1,185,658	-		ABIE53_004959	0.40	+0.2
1,185,658	-		ABIE53_004959	0.40	+2.5
1,185,658	-		ABIE53_004959	0.40	+0.9
1,185,658	-		ABIE53_004959	0.40	-1.1
1,185,658	-		ABIE53_004959	0.40	+2.3
1,185,754	+		ABIE53_004959	0.66	-0.8
1,185,754	+		ABIE53_004959	0.66	-0.8
1,185,755	-		ABIE53_004959	0.67	+0.5
1,185,755	-		ABIE53_004959	0.67	-0.5
1,185,811	+		ABIE53_004959	0.82	-0.8
1,185,812	-		ABIE53_004959	0.82	-0.3
1,185,870	+				+1.7
1,185,870	+				+0.9
1,185,870	+				+0.5
1,185,870	+				+0.5
1,185,870	+				-1.8
1,185,871	-				-0.3
1,185,871	-				-1.9
1,185,871	-				+0.1
1,185,871	-				-1.4
1,185,871	-				-0.1
1,185,871	-				+2.0
1,185,871	-				+1.5
1,185,871	-				+0.5
1,185,871	-				-0.4
1,185,999	+				-1.6
1,186,000	-				-0.3
1,186,160	-				-0.9
1,186,160	-				-0.5