Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_003574

Experiment: Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days
4,013,427	+		ABIE53_003572	0.83	-1.3
4,013,427	+		ABIE53_003572	0.83	-2.4
4,013,428	-		ABIE53_003572	0.83	-1.3
4,013,521	-				-0.3
4,013,571	+				+2.7
4,013,571	+				-0.2
4,013,583	+				+0.4
4,013,583	+				-2.8
4,013,584	-				-1.2
4,013,584	-				+0.4
4,013,584	-				-1.5
4,013,584	-				-0.3
4,013,586	+				-0.3
4,013,586	+				-1.6
4,013,586	+				+1.1
4,013,586	+				+0.4
4,013,587	-				-0.8
4,013,596	+				-3.0
4,013,596	+				+0.7
4,013,596	+				-1.2
4,013,596	+				-0.6
4,013,596	+				-0.5
4,013,596	+				-2.1
4,013,596	+				-0.5
4,013,596	+				+1.1
4,013,596	+				+1.7
4,013,597	-				+2.9
4,013,605	+				+0.5
4,013,605	+				+0.7
4,013,606	-				-1.6
4,013,606	-				-0.6
4,013,634	-				-2.1
4,013,680	+		ABIE53_003573	0.14	+1.3
4,013,680	+		ABIE53_003573	0.14	-0.5
4,013,680	+		ABIE53_003573	0.14	-0.5
4,013,680	+		ABIE53_003573	0.14	-0.7
4,013,680	+		ABIE53_003573	0.14	+0.1
4,013,680	+		ABIE53_003573	0.14	-1.2
4,013,680	+		ABIE53_003573	0.14	-3.0
4,013,680	+		ABIE53_003573	0.14	-0.2
4,013,680	+		ABIE53_003573	0.14	+1.7
4,013,680	+		ABIE53_003573	0.14	-0.3
4,013,680	+		ABIE53_003573	0.14	+0.4
4,013,681	-		ABIE53_003573	0.15	-2.0
4,013,681	-		ABIE53_003573	0.15	-0.8
4,013,681	-		ABIE53_003573	0.15	+0.1
4,013,681	-		ABIE53_003573	0.15	-0.6
4,013,681	-		ABIE53_003573	0.15	-1.3
4,013,681	-		ABIE53_003573	0.15	+0.1
4,013,681	-		ABIE53_003573	0.15	+0.6
4,013,681	-		ABIE53_003573	0.15	+0.4
4,013,681	-		ABIE53_003573	0.15	-1.6
4,013,681	-		ABIE53_003573	0.15	+1.7
4,013,682	+		ABIE53_003573	0.15	-1.5
4,013,682	+		ABIE53_003573	0.15	-2.6
4,013,682	+		ABIE53_003573	0.15	-1.7
4,013,682	+		ABIE53_003573	0.15	-0.3
4,013,683	-		ABIE53_003573	0.15	-1.2
4,013,683	-		ABIE53_003573	0.15	-1.1
4,013,683	-		ABIE53_003573	0.15	+0.7
4,013,704	+		ABIE53_003573	0.19	+0.4
4,013,704	+		ABIE53_003573	0.19	+0.4
4,013,704	+		ABIE53_003573	0.19	+0.1
4,013,705	-		ABIE53_003573	0.20	+1.1
4,013,705	-		ABIE53_003573	0.20	-0.8
4,013,705	-		ABIE53_003573	0.20	-0.1
4,013,854	-		ABIE53_003573	0.51	-1.3
4,013,889	+		ABIE53_003573	0.58	-0.7
4,013,889	+		ABIE53_003573	0.58	+2.7
4,013,889	+		ABIE53_003573	0.58	-0.5
4,013,889	+		ABIE53_003573	0.58	-0.8
4,013,889	+		ABIE53_003573	0.58	-3.6
4,013,890	-		ABIE53_003573	0.58	-1.9
4,013,890	-		ABIE53_003573	0.58	+1.5
4,013,890	-		ABIE53_003573	0.58	-1.0
4,013,890	-		ABIE53_003573	0.58	+1.7
4,013,964	+		ABIE53_003573	0.74	-1.7
4,013,964	+		ABIE53_003573	0.74	-0.0
4,013,965	-		ABIE53_003573	0.74	-0.4
4,013,965	-		ABIE53_003573	0.74	+0.2
4,014,085	+				-1.4
4,014,085	+				-2.0
4,014,198	+				+1.1
4,014,198	+				-1.1
4,014,198	+				+4.6
4,014,208	+				+0.2
4,014,208	+				-1.8
4,014,261	-				+4.1
4,014,287	+				+2.7
4,014,323	+				+5.1
4,014,323	+				+4.7
4,014,323	+				-0.1
4,014,323	+				+2.0
4,014,324	-				+3.2
4,014,324	-				+4.9
4,014,324	-				+6.3
4,014,324	-				+1.4
4,014,324	-				+5.2
4,014,324	-				+5.7
4,014,324	-				+3.7
4,014,324	-				+5.1
4,014,324	-				+5.5
4,014,556	+		ABIE53_003574	0.32	+8.0
4,014,556	+		ABIE53_003574	0.32	+0.4
4,014,557	-		ABIE53_003574	0.32	+1.4
4,014,557	-		ABIE53_003574	0.32	+1.1
4,014,762	-		ABIE53_003574	0.64	+5.0
4,014,762	-		ABIE53_003574	0.64	+1.1
4,014,762	-		ABIE53_003574	0.64	+2.6
4,014,762	-		ABIE53_003574	0.64	+3.8
4,014,762	-		ABIE53_003574	0.64	+1.7
4,014,762	-		ABIE53_003574	0.64	+5.0
4,014,762	-		ABIE53_003574	0.64	+0.9
4,014,827	+		ABIE53_003574	0.74	+2.7
4,014,827	+		ABIE53_003574	0.74	+2.7
4,014,827	+		ABIE53_003574	0.74	+0.1
4,014,828	-		ABIE53_003574	0.74	+2.8
4,014,828	-		ABIE53_003574	0.74	+2.9
4,014,828	-		ABIE53_003574	0.74	+1.1
4,014,828	-		ABIE53_003574	0.74	+2.6
4,014,861	-		ABIE53_003574	0.79	+2.4
4,014,861	-		ABIE53_003574	0.79	+2.6
4,014,893	+		ABIE53_003574	0.84	+1.8
4,014,893	+		ABIE53_003574	0.84	+1.5
4,014,893	+		ABIE53_003574	0.84	+0.7
4,014,893	+		ABIE53_003574	0.84	-0.9
4,014,894	-		ABIE53_003574	0.84	+1.5
4,014,894	-		ABIE53_003574	0.84	+2.3
4,014,968	-				+0.1
4,015,036	+				+4.3
4,015,036	+				+0.8
4,015,037	-				+2.1
4,015,037	-				+4.5
4,015,037	-				+6.0
4,015,037	-				+6.2
4,015,037	-				+0.7
4,015,037	-				+3.8
4,015,037	-				+4.4
4,015,037	-				+3.3
4,015,037	-				+3.5
4,015,088	-		ABIE53_003575	0.19	+5.7
4,015,111	+		ABIE53_003575	0.26	-0.3
4,015,111	+		ABIE53_003575	0.26	+1.1
4,015,112	-		ABIE53_003575	0.27	+4.2
4,015,130	+		ABIE53_003575	0.32	+1.9
4,015,131	-		ABIE53_003575	0.32	+6.6
4,015,131	-		ABIE53_003575	0.32	+5.3
4,015,131	-		ABIE53_003575	0.32	+7.2
4,015,131	-		ABIE53_003575	0.32	+3.8
4,015,131	-		ABIE53_003575	0.32	+3.9
4,015,131	-		ABIE53_003575	0.32	+5.0
4,015,135	+		ABIE53_003575	0.34	+1.8
4,015,136	-		ABIE53_003575	0.34	-0.3
4,015,369	-				-0.4
4,015,369	-				-0.1
4,015,369	-				-3.0
4,015,374	+				-0.9
4,015,374	+				+1.1
4,015,374	+				+1.7
4,015,374	+				+1.9
4,015,375	-				-0.6
4,015,414	+				+3.7
4,015,414	+				+1.1
4,015,414	+				+5.4
4,015,414	+				+1.7
4,015,414	+				+1.1
4,015,415	-				-0.3
4,015,415	-				-0.1
4,015,415	-				-0.6
4,015,415	-				+0.8
4,015,415	-				-1.9
4,015,415	-				+0.4
4,015,415	-				-1.5
4,015,415	-				+0.7
4,015,415	-				+2.1
4,015,425	-				+1.1
4,015,425	-				+0.5