Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_003461

Experiment: Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days
3,887,715	+		ABIE53_003460	0.42	-0.8
3,887,715	+		ABIE53_003460	0.42	+0.3
3,887,760	+		ABIE53_003460	0.45	-2.3
3,888,018	+		ABIE53_003460	0.65	-2.5
3,888,018	+		ABIE53_003460	0.65	-1.9
3,888,018	+		ABIE53_003460	0.65	-0.8
3,888,018	+		ABIE53_003460	0.65	-3.0
3,888,018	+		ABIE53_003460	0.65	-0.4
3,888,018	+		ABIE53_003460	0.65	-1.1
3,888,018	+		ABIE53_003460	0.65	-2.5
3,888,018	+		ABIE53_003460	0.65	+0.0
3,888,019	-		ABIE53_003460	0.65	-2.2
3,888,019	-		ABIE53_003460	0.65	-0.2
3,888,019	-		ABIE53_003460	0.65	-2.8
3,888,019	-		ABIE53_003460	0.65	-1.3
3,888,019	-		ABIE53_003460	0.65	-2.2
3,888,019	-		ABIE53_003460	0.65	-3.1
3,888,054	+		ABIE53_003460	0.68	-2.1
3,888,156	+		ABIE53_003460	0.76	-1.8
3,888,156	+		ABIE53_003460	0.76	-1.8
3,888,156	+		ABIE53_003460	0.76	-2.3
3,888,156	+		ABIE53_003460	0.76	-4.2
3,888,324	+		ABIE53_003460	0.89	-2.3
3,888,384	+				-1.2
3,888,384	+				-0.7
3,888,384	+				-2.9
3,888,384	+				-1.7
3,888,384	+				-2.4
3,888,384	+				-0.2
3,888,385	-				-0.4
3,888,385	-				-3.2
3,888,385	-				-1.5
3,888,385	-				-1.8
3,888,385	-				-1.1
3,888,385	-				+0.6
3,888,385	-				-1.9
3,888,385	-				-1.2
3,888,392	+				+0.6
3,888,392	+				-2.3
3,888,392	+				-2.4
3,888,392	+				+0.0
3,888,392	+				+0.0
3,888,392	+				-1.8
3,888,392	+				-2.3
3,888,392	+				-2.3
3,888,392	+				+1.0
3,888,393	-				-0.5
3,888,393	-				-1.8
3,888,393	-				-0.5
3,888,393	-				-0.4
3,888,393	-				-1.7
3,888,393	-				-0.7
3,888,393	-				-0.4
3,888,465	+				-3.9
3,888,465	+				-0.2
3,888,465	+				+0.3
3,888,465	+				-1.3
3,888,465	+				-0.5
3,888,466	-				+0.6
3,888,478	+				+1.0
3,888,478	+				-1.9
3,888,478	+				-1.0
3,888,478	+				-0.5
3,888,478	+				-1.5
3,888,478	+				-1.1
3,888,478	+				-0.4
3,888,478	+				+0.3
3,888,479	-				-1.7
3,888,479	-				-0.8
3,888,479	-				-1.2
3,888,479	-				+0.2
3,888,539	-				-1.1
3,888,548	+				-3.7
3,888,548	+				-1.0
3,888,548	+				-0.1
3,888,548	+				-3.1
3,888,548	+				-1.3
3,888,549	-				-0.4
3,888,549	-				+0.1
3,888,549	-				+0.0
3,888,549	-				+1.0
3,888,552	+				-2.3
3,888,552	+				-1.5
3,888,552	+				+0.6
3,888,553	-				+1.6
3,888,628	+				-1.2
3,888,628	+				-2.2
3,888,629	-				+0.0
3,888,629	-				-0.8
3,888,629	-				+0.6
3,888,707	+		ABIE53_003461	0.17	-2.3
3,888,707	+		ABIE53_003461	0.17	-0.1
3,888,707	+		ABIE53_003461	0.17	-1.1
3,888,707	+		ABIE53_003461	0.17	-1.8
3,888,707	+		ABIE53_003461	0.17	+0.6
3,888,707	+		ABIE53_003461	0.17	+0.0
3,888,708	-		ABIE53_003461	0.18	+3.1
3,888,708	-		ABIE53_003461	0.18	-2.6
3,888,708	-		ABIE53_003461	0.18	+2.0
3,888,708	-		ABIE53_003461	0.18	-0.4
3,888,708	-		ABIE53_003461	0.18	-1.8
3,888,708	-		ABIE53_003461	0.18	-0.2
3,888,708	-		ABIE53_003461	0.18	+2.6
3,888,731	+		ABIE53_003461	0.21	-1.8
3,888,732	-		ABIE53_003461	0.21	+0.3
3,888,732	-		ABIE53_003461	0.21	-0.7
3,888,754	+		ABIE53_003461	0.25	-0.3
3,888,755	+		ABIE53_003461	0.25	+0.0
3,888,755	+		ABIE53_003461	0.25	+2.2
3,888,755	+		ABIE53_003461	0.25	-0.1
3,888,755	+		ABIE53_003461	0.25	-2.6
3,888,755	+		ABIE53_003461	0.25	+2.3
3,888,755	+		ABIE53_003461	0.25	-0.4
3,888,755	+		ABIE53_003461	0.25	-1.1
3,888,755	+		ABIE53_003461	0.25	+1.6
3,888,755	+		ABIE53_003461	0.25	-1.4
3,888,755	+		ABIE53_003461	0.25	-0.7
3,888,755	+		ABIE53_003461	0.25	+0.0
3,888,755	+		ABIE53_003461	0.25	-1.5
3,888,755	+		ABIE53_003461	0.25	+0.3
3,888,755	+		ABIE53_003461	0.25	+1.6
3,888,755	+		ABIE53_003461	0.25	-3.1
3,888,755	+		ABIE53_003461	0.25	-1.3
3,888,755	+		ABIE53_003461	0.25	-0.0
3,888,756	-		ABIE53_003461	0.25	-1.4
3,888,756	-		ABIE53_003461	0.25	+1.3
3,888,756	-		ABIE53_003461	0.25	-2.8
3,888,756	-		ABIE53_003461	0.25	-0.4
3,888,756	-		ABIE53_003461	0.25	+0.3
3,888,756	-		ABIE53_003461	0.25	-1.1
3,888,756	-		ABIE53_003461	0.25	+0.3
3,888,756	-		ABIE53_003461	0.25	-0.5
3,888,756	-		ABIE53_003461	0.25	+0.6
3,888,756	-		ABIE53_003461	0.25	-0.6
3,888,756	-		ABIE53_003461	0.25	+1.0
3,888,756	-		ABIE53_003461	0.25	+1.2
3,888,756	-		ABIE53_003461	0.25	-1.1
3,888,756	-		ABIE53_003461	0.25	+0.2
3,888,756	-		ABIE53_003461	0.25	+0.7
3,888,756	-		ABIE53_003461	0.25	-0.8
3,888,756	-		ABIE53_003461	0.25	-0.4
3,888,756	-		ABIE53_003461	0.25	-0.2
3,888,756	-		ABIE53_003461	0.25	+1.6
3,888,756	-		ABIE53_003461	0.25	+1.5
3,888,756	-		ABIE53_003461	0.25	-0.4
3,888,756	-		ABIE53_003461	0.25	-1.3
3,888,756	-		ABIE53_003461	0.25	-1.5
3,888,756	-		ABIE53_003461	0.25	-1.7
3,888,756	-		ABIE53_003461	0.25	+0.3
3,888,756	-		ABIE53_003461	0.25	+2.0
3,888,756	-		ABIE53_003461	0.25	+0.6
3,888,760	+		ABIE53_003461	0.26	-1.0
3,888,760	+		ABIE53_003461	0.26	-0.7
3,888,760	+		ABIE53_003461	0.26	+0.0
3,888,760	+		ABIE53_003461	0.26	-0.2
3,888,760	+		ABIE53_003461	0.26	-2.3
3,888,760	+		ABIE53_003461	0.26	-0.4
3,888,760	+		ABIE53_003461	0.26	-1.5
3,888,760	+		ABIE53_003461	0.26	+1.0
3,888,760	+		ABIE53_003461	0.26	-1.7
3,888,761	-		ABIE53_003461	0.26	-0.5
3,888,773	+		ABIE53_003461	0.28	-1.1
3,888,773	+		ABIE53_003461	0.28	-0.2
3,888,773	+		ABIE53_003461	0.28	+1.1
3,888,773	+		ABIE53_003461	0.28	-0.8
3,888,773	+		ABIE53_003461	0.28	+0.9
3,888,773	+		ABIE53_003461	0.28	-0.8
3,888,774	-		ABIE53_003461	0.28	+1.0
3,888,774	-		ABIE53_003461	0.28	-1.2
3,888,836	+		ABIE53_003461	0.38	-2.3
3,888,836	+		ABIE53_003461	0.38	+1.6
3,888,836	+		ABIE53_003461	0.38	-1.2
3,888,836	+		ABIE53_003461	0.38	-3.3
3,888,836	+		ABIE53_003461	0.38	-1.5
3,888,836	+		ABIE53_003461	0.38	+1.0
3,888,836	+		ABIE53_003461	0.38	-0.3
3,888,837	-		ABIE53_003461	0.38	+0.6
3,888,837	-		ABIE53_003461	0.38	-2.9
3,888,837	-		ABIE53_003461	0.38	+1.0
3,888,857	+		ABIE53_003461	0.42	-0.2
3,888,857	+		ABIE53_003461	0.42	-1.1
3,888,857	+		ABIE53_003461	0.42	-1.4
3,888,857	+		ABIE53_003461	0.42	-0.7
3,888,858	-		ABIE53_003461	0.42	+0.3
3,888,858	-		ABIE53_003461	0.42	-0.4
3,888,858	-		ABIE53_003461	0.42	+0.3
3,888,858	-		ABIE53_003461	0.42	-1.0
3,888,858	-		ABIE53_003461	0.42	-0.8
3,888,858	-		ABIE53_003461	0.42	-1.3
3,888,858	-		ABIE53_003461	0.42	-1.1
3,888,858	-		ABIE53_003461	0.42	+0.9
3,888,859	+		ABIE53_003461	0.42	+0.0
3,888,859	+		ABIE53_003461	0.42	+1.5
3,888,859	+		ABIE53_003461	0.42	-1.5
3,888,859	+		ABIE53_003461	0.42	-0.0
3,888,859	+		ABIE53_003461	0.42	-0.7
3,888,859	+		ABIE53_003461	0.42	+0.1
3,888,860	-		ABIE53_003461	0.42	+0.7
3,888,860	-		ABIE53_003461	0.42	+1.5
3,888,860	-		ABIE53_003461	0.42	-1.0
3,888,860	-		ABIE53_003461	0.42	+2.8
3,888,860	-		ABIE53_003461	0.42	+2.1
3,888,860	-		ABIE53_003461	0.42	+0.3
3,888,995	+		ABIE53_003461	0.64	-2.4
3,888,995	+		ABIE53_003461	0.64	-1.9
3,888,995	+		ABIE53_003461	0.64	-1.4
3,888,995	+		ABIE53_003461	0.64	-0.4
3,888,995	+		ABIE53_003461	0.64	-0.2
3,888,995	+		ABIE53_003461	0.64	-1.1
3,888,995	+		ABIE53_003461	0.64	-0.4
3,888,995	+		ABIE53_003461	0.64	-1.3
3,888,995	+		ABIE53_003461	0.64	-1.9
3,888,995	+		ABIE53_003461	0.64	+1.0
3,888,995	+		ABIE53_003461	0.64	+0.0
3,888,995	+		ABIE53_003461	0.64	+1.0
3,888,995	+		ABIE53_003461	0.64	+0.6
3,888,995	+		ABIE53_003461	0.64	-0.4
3,888,995	+		ABIE53_003461	0.64	+0.1
3,888,995	+		ABIE53_003461	0.64	+0.3
3,888,995	+		ABIE53_003461	0.64	-2.6
3,888,995	+		ABIE53_003461	0.64	+1.0
3,888,995	+		ABIE53_003461	0.64	+0.6
3,888,995	+		ABIE53_003461	0.64	+0.0
3,888,996	-		ABIE53_003461	0.64	+1.5
3,888,996	-		ABIE53_003461	0.64	-1.6
3,888,996	-		ABIE53_003461	0.64	+0.0
3,888,996	-		ABIE53_003461	0.64	+0.3
3,888,996	-		ABIE53_003461	0.64	+0.8
3,888,996	-		ABIE53_003461	0.64	+2.0
3,888,996	-		ABIE53_003461	0.64	-1.6
3,888,996	-		ABIE53_003461	0.64	+0.0
3,888,996	-		ABIE53_003461	0.64	-1.0
3,888,996	-		ABIE53_003461	0.64	+1.3
3,888,996	-		ABIE53_003461	0.64	+0.7
3,888,996	-		ABIE53_003461	0.64	+0.3
3,888,996	-		ABIE53_003461	0.64	+0.4
3,888,996	-		ABIE53_003461	0.64	-0.1
3,888,996	-		ABIE53_003461	0.64	-0.4
3,888,996	-		ABIE53_003461	0.64	-0.7
3,888,996	-		ABIE53_003461	0.64	+1.0
3,888,996	-		ABIE53_003461	0.64	-0.8
3,888,996	-		ABIE53_003461	0.64	+0.6
3,888,996	-		ABIE53_003461	0.64	-1.0
3,889,094	+		ABIE53_003461	0.80	-0.2
3,889,094	+		ABIE53_003461	0.80	-1.6
3,889,094	+		ABIE53_003461	0.80	+0.0
3,889,094	+		ABIE53_003461	0.80	+1.2
3,889,094	+		ABIE53_003461	0.80	+2.6
3,889,094	+		ABIE53_003461	0.80	-0.8
3,889,094	+		ABIE53_003461	0.80	-2.4
3,889,094	+		ABIE53_003461	0.80	-0.7
3,889,094	+		ABIE53_003461	0.80	+3.4
3,889,094	+		ABIE53_003461	0.80	-0.8
3,889,094	+		ABIE53_003461	0.80	-0.8
3,889,095	-		ABIE53_003461	0.80	+2.3
3,889,095	-		ABIE53_003461	0.80	-0.3
3,889,095	-		ABIE53_003461	0.80	-2.2
3,889,095	-		ABIE53_003461	0.80	-0.2
3,889,095	-		ABIE53_003461	0.80	-0.4
3,889,095	-		ABIE53_003461	0.80	-1.0
3,889,095	-		ABIE53_003461	0.80	+0.0
3,889,095	-		ABIE53_003461	0.80	-0.4
3,889,095	-		ABIE53_003461	0.80	+1.0
3,889,095	-		ABIE53_003461	0.80	+2.8
3,889,095	-		ABIE53_003461	0.80	+1.9
3,889,105	+		ABIE53_003461	0.81	-2.8
3,889,105	+		ABIE53_003461	0.81	+1.0
3,889,106	-		ABIE53_003461	0.82	+4.4
3,889,106	-		ABIE53_003461	0.82	-0.4
3,889,109	+		ABIE53_003461	0.82	-1.9
3,889,109	+		ABIE53_003461	0.82	-1.7
3,889,109	+		ABIE53_003461	0.82	-2.8
3,889,109	+		ABIE53_003461	0.82	+2.6
3,889,109	+		ABIE53_003461	0.82	+0.3
3,889,110	-		ABIE53_003461	0.82	+0.7
3,889,110	-		ABIE53_003461	0.82	+0.6
3,889,110	-		ABIE53_003461	0.82	+2.2
3,889,110	-		ABIE53_003461	0.82	+0.4
3,889,110	-		ABIE53_003461	0.82	+0.6
3,889,110	-		ABIE53_003461	0.82	+1.0
3,889,110	-		ABIE53_003461	0.82	-0.5
3,889,110	-		ABIE53_003461	0.82	+0.7
3,889,110	-		ABIE53_003461	0.82	-0.3
3,889,110	-		ABIE53_003461	0.82	-0.3
3,889,150	+		ABIE53_003461	0.89	-0.2
3,889,150	+		ABIE53_003461	0.89	+1.0
3,889,150	+		ABIE53_003461	0.89	-0.5
3,889,150	+		ABIE53_003461	0.89	-1.0
3,889,150	+		ABIE53_003461	0.89	+1.6
3,889,150	+		ABIE53_003461	0.89	+0.2
3,889,150	+		ABIE53_003461	0.89	-1.6
3,889,150	+		ABIE53_003461	0.89	-0.4
3,889,150	+		ABIE53_003461	0.89	-1.2
3,889,150	+		ABIE53_003461	0.89	-3.2
3,889,150	+		ABIE53_003461	0.89	-0.6
3,889,150	+		ABIE53_003461	0.89	-0.1
3,889,150	+		ABIE53_003461	0.89	+1.0
3,889,150	+		ABIE53_003461	0.89	+1.3
3,889,150	+		ABIE53_003461	0.89	-1.9
3,889,150	+		ABIE53_003461	0.89	-0.3
3,889,151	-		ABIE53_003461	0.89	+0.8
3,889,151	-		ABIE53_003461	0.89	+1.6
3,889,151	-		ABIE53_003461	0.89	-0.4
3,889,151	-		ABIE53_003461	0.89	+0.6
3,889,151	-		ABIE53_003461	0.89	-0.4
3,889,151	-		ABIE53_003461	0.89	+0.2
3,889,151	-		ABIE53_003461	0.89	+1.6
3,889,151	-		ABIE53_003461	0.89	+0.5
3,889,151	-		ABIE53_003461	0.89	+0.8
3,889,151	-		ABIE53_003461	0.89	+0.2
3,889,151	-		ABIE53_003461	0.89	+3.0
3,889,167	+				-1.1
3,889,168	-				+0.6
3,889,168	-				+0.9
3,889,208	+				-3.6
3,889,208	+				+0.0
3,889,208	+				-1.2
3,889,209	-				-0.4
3,889,209	-				+1.0
3,889,209	-				-2.4
3,889,209	-				-0.5
3,889,209	-				-0.0
3,889,244	+				-0.8
3,889,244	+				-1.1
3,889,244	+				-0.4
3,889,244	+				-0.1
3,889,244	+				-1.7
3,889,244	+				-0.2
3,889,245	-				-0.1
3,889,245	-				+1.5
3,889,245	-				+3.1
3,889,245	-				+0.7
3,889,267	+				-2.3
3,889,267	+				-4.4
3,889,267	+				+1.0
3,889,368	+				-1.4
3,889,368	+				+0.5
3,889,368	+				+0.3
3,889,369	-				+1.6
3,889,369	-				-1.1
3,889,369	-				-0.4
3,889,369	-				-1.2
3,889,369	-				+1.3
3,889,369	-				+0.6
3,889,448	+				+1.2
3,889,448	+				+2.2
3,889,448	+				+1.5
3,889,448	+				+3.0
3,889,448	+				-0.7
3,889,448	+				-0.4
3,889,448	+				+1.5
3,889,448	+				+2.9
3,889,448	+				+0.7
3,889,448	+				+1.1
3,889,449	-				+1.9
3,889,449	-				+0.0
3,889,449	-				-2.4
3,889,449	-				-0.2
3,889,449	-				+0.6
3,889,449	-				+1.9
3,889,449	-				-0.5
3,889,449	-				+2.9
3,889,449	-				+1.0
3,889,449	-				+0.0
3,889,449	-				+0.4
3,889,449	-				-0.7
3,889,449	-				+1.0
3,889,449	-				-0.5
3,889,495	+				+2.2
3,889,495	+				+1.2
3,889,495	+				+3.7
3,889,495	+				-1.4
3,889,495	+				-1.1
3,889,496	-				+3.8
3,889,496	-				+5.0
3,889,509	+				+2.6
3,889,510	-				+2.2
3,889,510	-				+0.8
3,889,510	-				-0.5
3,889,526	+				+1.0
3,889,526	+				-0.8
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3,889,527	-				-0.5
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3,889,613	+		ABIE53_003462	0.11	+1.0
3,889,613	+		ABIE53_003462	0.11	+0.0
3,889,614	-		ABIE53_003462	0.11	+1.6
3,889,614	-		ABIE53_003462	0.11	+1.0
3,889,614	-		ABIE53_003462	0.11	+2.4
3,889,746	+		ABIE53_003462	0.19	+2.0
3,889,746	+		ABIE53_003462	0.19	+0.5
3,889,746	+		ABIE53_003462	0.19	+0.3
3,889,747	-		ABIE53_003462	0.19	-0.5
3,889,747	-		ABIE53_003462	0.19	-1.8
3,889,755	+		ABIE53_003462	0.20	-0.7
3,889,755	+		ABIE53_003462	0.20	+1.0
3,889,755	+		ABIE53_003462	0.20	+0.7
3,889,755	+		ABIE53_003462	0.20	+1.7
3,889,755	+		ABIE53_003462	0.20	+1.0
3,889,755	+		ABIE53_003462	0.20	+0.9
3,889,755	+		ABIE53_003462	0.20	-2.5
3,889,755	+		ABIE53_003462	0.20	+1.2
3,889,755	+		ABIE53_003462	0.20	+1.2
3,889,755	+		ABIE53_003462	0.20	+1.9
3,889,755	+		ABIE53_003462	0.20	-0.3
3,889,755	+		ABIE53_003462	0.20	+4.5
3,889,756	-		ABIE53_003462	0.20	+0.6
3,889,756	-		ABIE53_003462	0.20	+1.2
3,889,756	-		ABIE53_003462	0.20	-0.4
3,889,756	-		ABIE53_003462	0.20	-1.7
3,889,756	-		ABIE53_003462	0.20	+2.9
3,889,799	+		ABIE53_003462	0.23	-0.3
3,889,799	+		ABIE53_003462	0.23	+0.0
3,889,799	+		ABIE53_003462	0.23	-0.4
3,889,799	+		ABIE53_003462	0.23	-0.0
3,889,799	+		ABIE53_003462	0.23	+4.5
3,889,800	-		ABIE53_003462	0.23	-1.4
3,889,961	+		ABIE53_003462	0.33	-0.8
3,889,961	+		ABIE53_003462	0.33	+2.7
3,890,096	+		ABIE53_003462	0.42	-0.4
3,890,096	+		ABIE53_003462	0.42	+1.8
3,890,096	+		ABIE53_003462	0.42	+0.6
3,890,096	+		ABIE53_003462	0.42	-0.3
3,890,096	+		ABIE53_003462	0.42	+1.1
3,890,097	-		ABIE53_003462	0.42	+1.6
3,890,097	-		ABIE53_003462	0.42	-1.2