Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_002370

Experiment: Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days
2,659,140	+		ABIE53_002369	0.25	+0.2
2,659,140	+		ABIE53_002369	0.25	-0.2
2,659,140	+		ABIE53_002369	0.25	+0.1
2,659,140	+		ABIE53_002369	0.25	+0.2
2,659,140	+		ABIE53_002369	0.25	-1.9
2,659,140	+		ABIE53_002369	0.25	-1.0
2,659,141	-		ABIE53_002369	0.25	-1.3
2,659,141	-		ABIE53_002369	0.25	+0.6
2,659,141	-		ABIE53_002369	0.25	+0.5
2,659,141	-		ABIE53_002369	0.25	-0.5
2,659,141	-		ABIE53_002369	0.25	+0.2
2,659,141	-		ABIE53_002369	0.25	-0.7
2,659,141	-		ABIE53_002369	0.25	-1.5
2,659,141	-		ABIE53_002369	0.25	-1.8
2,659,266	+		ABIE53_002369	0.36	-0.3
2,659,266	+		ABIE53_002369	0.36	+0.9
2,659,266	+		ABIE53_002369	0.36	-0.5
2,659,266	+		ABIE53_002369	0.36	+1.2
2,659,267	-		ABIE53_002369	0.36	-0.0
2,659,267	-		ABIE53_002369	0.36	-1.2
2,659,663	+		ABIE53_002369	0.70	-0.7
2,659,663	+		ABIE53_002369	0.70	-0.4
2,659,664	-		ABIE53_002369	0.70	+0.7
2,659,664	-		ABIE53_002369	0.70	-0.2
2,659,664	-		ABIE53_002369	0.70	+0.1
2,659,664	-		ABIE53_002369	0.70	+0.7
2,659,681	-		ABIE53_002369	0.72	-0.5
2,659,681	-		ABIE53_002369	0.72	+0.9
2,659,713	+		ABIE53_002369	0.74	-0.8
2,659,928	-				+0.9
2,660,005	+				+2.9
2,660,006	-				-0.3
2,660,006	-				+1.4
2,660,006	-				-0.5
2,660,240	+		ABIE53_002370	0.66	+0.2
2,660,241	-		ABIE53_002370	0.66	+2.5
2,660,248	+		ABIE53_002370	0.70	+0.3
2,660,248	+		ABIE53_002370	0.70	-1.7
2,660,248	+		ABIE53_002370	0.70	+0.8
2,660,249	-		ABIE53_002370	0.70	+0.8
2,660,249	-		ABIE53_002370	0.70	+4.8
2,660,249	-		ABIE53_002370	0.70	-0.5
2,660,249	-		ABIE53_002370	0.70	+2.9
2,660,249	-		ABIE53_002370	0.70	+0.2
2,660,249	-		ABIE53_002370	0.70	-1.0
2,660,252	+				+0.4
2,660,252	+				+0.5
2,660,252	+				+1.4
2,660,253	-				-0.5
2,660,253	-				-1.1
2,660,253	-				-0.7
2,660,278	+				-0.9
2,660,281	+				+0.5
2,660,282	-				+1.9
2,660,326	+				-0.6
2,660,326	+				-0.1
2,660,326	+				+1.5
2,660,326	+				+2.7
2,660,327	-				-1.2
2,660,327	-				-0.1
2,660,327	-				+0.0
2,660,327	-				-2.4
2,660,394	+		ABIE53_002371	0.15	-0.5
2,660,419	+		ABIE53_002371	0.18	-2.4
2,660,419	+		ABIE53_002371	0.18	+0.2
2,660,419	+		ABIE53_002371	0.18	+0.9
2,660,419	+		ABIE53_002371	0.18	+1.3
2,660,420	-		ABIE53_002371	0.18	-0.5
2,660,420	-		ABIE53_002371	0.18	+0.5
2,660,420	-		ABIE53_002371	0.18	-0.2
2,660,420	-		ABIE53_002371	0.18	+2.8
2,660,420	-		ABIE53_002371	0.18	-0.3
2,660,422	+		ABIE53_002371	0.18	-0.1
2,660,422	+		ABIE53_002371	0.18	+0.8
2,660,422	+		ABIE53_002371	0.18	-1.5
2,660,422	+		ABIE53_002371	0.18	-1.4
2,660,423	-		ABIE53_002371	0.18	-1.7
2,660,423	-		ABIE53_002371	0.18	-1.7
2,660,434	+		ABIE53_002371	0.19	+0.5
2,660,532	+		ABIE53_002371	0.29	+0.2
2,660,534	+		ABIE53_002371	0.30	+0.9
2,660,534	+		ABIE53_002371	0.30	+2.5
2,660,562	-		ABIE53_002371	0.32	-1.6
2,660,562	-		ABIE53_002371	0.32	-0.5
2,660,601	-		ABIE53_002371	0.37	+1.4
2,660,601	-		ABIE53_002371	0.37	-0.3
2,660,639	+		ABIE53_002371	0.41	-1.0
2,660,639	+		ABIE53_002371	0.41	+1.7
2,660,640	-		ABIE53_002371	0.41	-0.3
2,660,640	-		ABIE53_002371	0.41	-0.6
2,660,640	-		ABIE53_002371	0.41	-1.7
2,660,640	-		ABIE53_002371	0.41	-1.4
2,660,743	-		ABIE53_002371	0.51	-1.1
2,660,793	-		ABIE53_002371	0.57	-0.8
2,660,813	+		ABIE53_002371	0.59	-1.1
2,660,814	-		ABIE53_002371	0.59	+1.5
2,660,814	-		ABIE53_002371	0.59	+1.6
2,660,885	+		ABIE53_002371	0.66	-0.1
2,660,886	-		ABIE53_002371	0.66	+0.5
2,660,954	+		ABIE53_002371	0.73	-0.7
2,660,955	-		ABIE53_002371	0.74	-3.1
2,660,955	-		ABIE53_002371	0.74	+1.5
2,661,032	+		ABIE53_002371	0.82	-2.5
2,661,032	+		ABIE53_002371	0.82	-1.2
2,661,032	+		ABIE53_002371	0.82	-1.6
2,661,032	+		ABIE53_002371	0.82	-0.3
2,661,032	+		ABIE53_002371	0.82	-0.1
2,661,032	+		ABIE53_002371	0.82	-1.1
2,661,032	+		ABIE53_002371	0.82	+7.2
2,661,033	-		ABIE53_002371	0.82	+2.5
2,661,033	-		ABIE53_002371	0.82	+0.2
2,661,033	-		ABIE53_002371	0.82	-0.3
2,661,033	-		ABIE53_002371	0.82	-0.5
2,661,033	-		ABIE53_002371	0.82	-1.3
2,661,033	-		ABIE53_002371	0.82	-1.0
2,661,033	-		ABIE53_002371	0.82	-1.6
2,661,033	-		ABIE53_002371	0.82	-1.4
2,661,042	-		ABIE53_002371	0.83	-0.5
2,661,098	+		ABIE53_002371	0.89	+2.5
2,661,098	+		ABIE53_002371	0.89	-0.3
2,661,098	+		ABIE53_002371	0.89	+0.9
2,661,099	-		ABIE53_002371	0.89	-0.5
2,661,099	-		ABIE53_002371	0.89	+4.0
2,661,099	-		ABIE53_002371	0.89	+1.2
2,661,099	-		ABIE53_002371	0.89	+1.8
2,661,099	-		ABIE53_002371	0.89	-1.4
2,661,099	-		ABIE53_002371	0.89	-2.1
2,661,099	-		ABIE53_002371	0.89	-2.3
2,661,099	-		ABIE53_002371	0.89	-1.0
2,661,113	+				+1.5
2,661,113	+				+1.3
2,661,113	+				+1.5
2,661,113	+				+0.5
2,661,114	-				+0.9
2,661,114	-				-0.5
2,661,130	-				+0.2
2,661,193	+				-0.7
2,661,194	-				+0.5
2,661,278	-				-3.1
2,661,305	+				-0.1
2,661,305	+				+0.5
2,661,305	+				-1.2