Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_000993

Experiment: Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days
1,087,972	+		ABIE53_000991	0.76	-1.8
1,087,972	+		ABIE53_000991	0.76	+0.3
1,087,972	+		ABIE53_000991	0.76	-1.0
1,087,973	-		ABIE53_000991	0.76	+1.1
1,087,973	-		ABIE53_000991	0.76	+1.3
1,087,973	-		ABIE53_000991	0.76	-0.1
1,087,973	-		ABIE53_000991	0.76	-0.4
1,087,973	-		ABIE53_000991	0.76	-0.7
1,087,973	-		ABIE53_000991	0.76	-1.9
1,087,973	-		ABIE53_000991	0.76	-1.6
1,088,013	+		ABIE53_000991	0.79	-0.9
1,088,013	+		ABIE53_000991	0.79	-1.5
1,088,013	+		ABIE53_000991	0.79	-0.5
1,088,014	-		ABIE53_000991	0.79	-1.4
1,088,014	-		ABIE53_000991	0.79	-0.4
1,088,014	-		ABIE53_000991	0.79	-0.4
1,088,019	+		ABIE53_000991	0.79	-4.0
1,088,019	+		ABIE53_000991	0.79	+1.2
1,088,019	+		ABIE53_000991	0.79	-1.2
1,088,019	+		ABIE53_000991	0.79	+0.9
1,088,019	+		ABIE53_000991	0.79	-1.5
1,088,019	+		ABIE53_000991	0.79	+0.9
1,088,020	-		ABIE53_000991	0.79	+0.9
1,088,020	-		ABIE53_000991	0.79	-0.5
1,088,020	-		ABIE53_000991	0.79	-0.5
1,088,051	+		ABIE53_000991	0.81	+0.4
1,088,152	+		ABIE53_000991	0.89	-1.5
1,088,241	-				+0.8
1,088,341	+				+1.1
1,088,341	+				-0.7
1,088,342	-				-1.7
1,088,342	-				+0.1
1,088,342	-				+0.6
1,088,554	+		ABIE53_000992	0.37	+0.9
1,088,556	+		ABIE53_000992	0.38	-3.7
1,088,556	+		ABIE53_000992	0.38	+1.1
1,088,557	-		ABIE53_000992	0.38	+0.5
1,088,557	-		ABIE53_000992	0.38	+1.8
1,088,557	-		ABIE53_000992	0.38	+1.9
1,088,575	+		ABIE53_000992	0.41	-2.7
1,088,576	-		ABIE53_000992	0.41	+2.0
1,088,695	-		ABIE53_000992	0.63	-0.9
1,088,726	+		ABIE53_000992	0.68	+0.3
1,088,746	+		ABIE53_000992	0.72	-0.5
1,088,747	-		ABIE53_000992	0.72	-1.0
1,088,797	+		ABIE53_000992	0.81	-2.9
1,088,797	+		ABIE53_000992	0.81	+2.2
1,088,797	+		ABIE53_000992	0.81	-2.5
1,088,797	+		ABIE53_000992	0.81	+0.1
1,088,798	-		ABIE53_000992	0.81	-1.3
1,088,868	+				-2.3
1,088,868	+				-0.4
1,088,868	+				+0.5
1,088,869	-				+0.1
1,088,873	+				-0.7
1,088,908	+				-0.4
1,088,908	+				+2.1
1,088,908	+				+1.5
1,088,908	+				-0.1
1,088,908	+				-1.2
1,088,908	+				+0.5
1,088,909	-				-0.1
1,088,909	-				+0.9
1,088,909	-				+2.9
1,088,909	-				-2.2
1,088,909	-				-1.8
1,088,984	-				+0.1
1,088,984	-				+0.5
1,088,993	+				-1.6
1,088,994	-				-1.1
1,089,004	-				+1.8
1,089,032	+				-0.1
1,089,033	-				+0.1
1,089,033	-				+2.0
1,089,033	-				-1.7
1,089,114	+		ABIE53_000993	0.15	-1.9
1,089,114	+		ABIE53_000993	0.15	-0.5
1,089,114	+		ABIE53_000993	0.15	+2.5
1,089,114	+		ABIE53_000993	0.15	-0.8
1,089,115	-		ABIE53_000993	0.16	-0.8
1,089,115	-		ABIE53_000993	0.16	-1.9
1,089,115	-		ABIE53_000993	0.16	+0.1
1,089,115	-		ABIE53_000993	0.16	-1.5
1,089,115	-		ABIE53_000993	0.16	-1.6
1,089,118	+		ABIE53_000993	0.16	-2.2
1,089,119	-		ABIE53_000993	0.16	-2.4
1,089,150	+		ABIE53_000993	0.18	-0.5
1,089,151	-		ABIE53_000993	0.18	-2.9
1,089,198	+		ABIE53_000993	0.22	-1.6
1,089,199	-		ABIE53_000993	0.22	-2.6
1,089,320	+		ABIE53_000993	0.31	+2.0
1,089,320	+		ABIE53_000993	0.31	-0.1
1,089,321	-		ABIE53_000993	0.31	-0.6
1,089,383	+		ABIE53_000993	0.35	-1.7
1,089,384	-		ABIE53_000993	0.35	+0.5
1,089,384	-		ABIE53_000993	0.35	+0.5
1,089,384	-		ABIE53_000993	0.35	-0.4
1,089,425	+		ABIE53_000993	0.38	+0.9
1,089,425	+		ABIE53_000993	0.38	-0.1
1,089,425	+		ABIE53_000993	0.38	+1.5
1,089,425	+		ABIE53_000993	0.38	-0.7
1,089,426	-		ABIE53_000993	0.38	-0.6
1,089,443	+		ABIE53_000993	0.40	-1.5
1,089,443	+		ABIE53_000993	0.40	+0.1
1,089,444	-		ABIE53_000993	0.40	-2.2
1,089,444	-		ABIE53_000993	0.40	+0.2
1,089,446	+		ABIE53_000993	0.40	+0.9
1,089,446	+		ABIE53_000993	0.40	-1.5
1,089,446	+		ABIE53_000993	0.40	-0.4
1,089,446	+		ABIE53_000993	0.40	-0.1
1,089,446	+		ABIE53_000993	0.40	-0.7
1,089,446	+		ABIE53_000993	0.40	-2.8
1,089,446	+		ABIE53_000993	0.40	+1.5
1,089,447	-		ABIE53_000993	0.40	-1.0
1,089,447	-		ABIE53_000993	0.40	-0.1
1,089,447	-		ABIE53_000993	0.40	+0.9
1,089,447	-		ABIE53_000993	0.40	-0.4
1,089,447	-		ABIE53_000993	0.40	+1.5
1,089,447	-		ABIE53_000993	0.40	+0.9
1,089,447	-		ABIE53_000993	0.40	-0.5
1,089,447	-		ABIE53_000993	0.40	+0.5
1,089,667	+		ABIE53_000993	0.56	-4.0
1,089,683	+		ABIE53_000993	0.57	+1.6
1,089,684	-		ABIE53_000993	0.57	+0.3
1,089,710	+		ABIE53_000993	0.59	+0.8
1,089,710	+		ABIE53_000993	0.59	-1.8
1,089,711	-		ABIE53_000993	0.59	-1.8
1,089,711	-		ABIE53_000993	0.59	+0.9
1,089,730	+		ABIE53_000993	0.61	+0.7
1,089,730	+		ABIE53_000993	0.61	-0.4
1,089,755	+		ABIE53_000993	0.63	-0.5
1,089,755	+		ABIE53_000993	0.63	-2.6
1,089,755	+		ABIE53_000993	0.63	-0.4
1,089,755	+		ABIE53_000993	0.63	-0.4
1,089,756	-		ABIE53_000993	0.63	-0.5
1,089,756	-		ABIE53_000993	0.63	+0.4
1,089,756	-		ABIE53_000993	0.63	+0.5
1,089,756	-		ABIE53_000993	0.63	-0.3
1,089,756	-		ABIE53_000993	0.63	-3.2
1,089,756	-		ABIE53_000993	0.63	-0.7
1,089,756	-		ABIE53_000993	0.63	-0.4
1,089,770	+		ABIE53_000993	0.64	-2.0
1,089,770	+		ABIE53_000993	0.64	-1.1
1,089,770	+		ABIE53_000993	0.64	+0.7
1,089,770	+		ABIE53_000993	0.64	-0.9
1,089,770	+		ABIE53_000993	0.64	-0.1
1,089,770	+		ABIE53_000993	0.64	+1.0
1,089,770	+		ABIE53_000993	0.64	+2.5
1,089,770	+		ABIE53_000993	0.64	+1.1
1,089,771	-		ABIE53_000993	0.64	-1.5
1,089,771	-		ABIE53_000993	0.64	-0.9
1,089,771	-		ABIE53_000993	0.64	-1.1
1,089,771	-		ABIE53_000993	0.64	-1.4
1,089,771	-		ABIE53_000993	0.64	+1.2
1,089,771	-		ABIE53_000993	0.64	+0.5
1,089,837	+		ABIE53_000993	0.69	-1.5
1,089,840	-		ABIE53_000993	0.69	-2.6
1,089,895	+		ABIE53_000993	0.73	+0.5
1,089,895	+		ABIE53_000993	0.73	-0.4
1,089,896	-		ABIE53_000993	0.73	+0.1
1,089,941	+		ABIE53_000993	0.76	+1.2
1,089,942	-		ABIE53_000993	0.76	+2.1
1,090,025	+		ABIE53_000993	0.82	+0.6
1,090,025	+		ABIE53_000993	0.82	-0.7
1,090,025	+		ABIE53_000993	0.82	-0.5
1,090,026	-		ABIE53_000993	0.82	-1.0
1,090,026	-		ABIE53_000993	0.82	-3.1
1,090,026	-		ABIE53_000993	0.82	-1.4
1,090,026	-		ABIE53_000993	0.82	+0.9
1,090,027	+		ABIE53_000993	0.83	+5.9
1,090,028	-		ABIE53_000993	0.83	+0.4
1,090,028	-		ABIE53_000993	0.83	-0.8
1,090,028	-		ABIE53_000993	0.83	-0.4
1,090,060	+		ABIE53_000993	0.85	-0.1
1,090,061	-		ABIE53_000993	0.85	+0.9
1,090,061	-		ABIE53_000993	0.85	-1.9
1,090,066	+		ABIE53_000993	0.85	+0.5
1,090,073	+		ABIE53_000993	0.86	+2.0
1,090,073	+		ABIE53_000993	0.86	-0.2
1,090,074	-		ABIE53_000993	0.86	+0.5
1,090,172	+				+0.1
1,090,172	+				-1.2
1,090,172	+				+0.9
1,090,172	+				+0.5
1,090,172	+				-0.0
1,090,173	-				+0.1
1,090,173	-				-1.3
1,090,173	-				-0.4
1,090,173	-				-1.2
1,090,173	-				+1.3
1,090,249	+				-0.0
1,090,249	+				+2.3
1,090,249	+				+0.1
1,090,249	+				-3.0
1,090,249	+				+0.3
1,090,249	+				-0.2
1,090,249	+				-2.7
1,090,249	+				-0.5
1,090,250	-				+0.6
1,090,250	-				+0.6
1,090,250	-				+0.9
1,090,250	-				-1.0
1,090,250	-				-0.7
1,090,250	-				+0.1
1,090,250	-				-0.5
1,090,250	-				-1.0
1,090,250	-				+0.6
1,090,250	-				+0.9
1,090,250	-				-0.4
1,090,250	-				-1.2
1,090,250	-				-1.2
1,090,250	-				-0.0
1,090,250	-				+0.5
1,090,250	-				+0.3
1,090,250	-				-2.5
1,090,469	+		ABIE53_000994	0.30	+0.5
1,090,727	+				-2.6
1,090,728	-				+0.9
1,090,750	-				-0.7
1,090,750	-				+2.5
1,090,905	+		ABIE53_000995	0.31	+0.9
1,090,905	+		ABIE53_000995	0.31	-1.5
1,090,906	-		ABIE53_000995	0.31	-2.0
1,090,906	-		ABIE53_000995	0.31	-0.3
1,090,910	+		ABIE53_000995	0.32	-1.6
1,090,910	+		ABIE53_000995	0.32	-1.5
1,090,911	-		ABIE53_000995	0.32	-0.4
1,090,911	-		ABIE53_000995	0.32	-0.4
1,090,978	+		ABIE53_000995	0.43	+0.5
1,090,978	+		ABIE53_000995	0.43	-1.8
1,090,979	-		ABIE53_000995	0.44	-1.1
1,091,003	-		ABIE53_000995	0.48	-0.9
1,091,003	-		ABIE53_000995	0.48	+1.5