Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4419

Experiment: BHIS with Chlorpromazine 0.2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT4417 and BT4418 are separated by 116 nucleotidesBT4418 and BT4419 are separated by 13 nucleotidesBT4419 and BT4420 are separated by 818 nucleotides BT4417: BT4417 - HD superfamily hydrolase (NCBI ptt file), at 5,820,481 to 5,822,016 BT4417 BT4418: BT4418 - hypothetical protein (NCBI ptt file), at 5,822,133 to 5,822,423 BT4418 BT4419: BT4419 - hypothetical protein (NCBI ptt file), at 5,822,437 to 5,822,730 BT4419 BT4420: BT4420 - conserved hypothetical protein, with a conserved domain (NCBI ptt file), at 5,823,549 to 5,824,637 BT4420 Position (kb) 5822 5823Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5822.071 kb on - strandat 5822.758 kb on - strandat 5822.848 kb on + strandat 5822.851 kb on - strandat 5822.880 kb on - strandat 5822.959 kb on + strandat 5822.960 kb on - strandat 5822.961 kb on + strandat 5822.962 kb on - strandat 5822.962 kb on - strandat 5823.000 kb on - strandat 5823.006 kb on - strandat 5823.082 kb on - strandat 5823.120 kb on + strandat 5823.127 kb on - strandat 5823.133 kb on + strandat 5823.133 kb on + strandat 5823.133 kb on + strandat 5823.196 kb on + strandat 5823.305 kb on - strandat 5823.305 kb on - strandat 5823.322 kb on - strandat 5823.324 kb on + strandat 5823.528 kb on - strandat 5823.538 kb on - strandat 5823.606 kb on - strandat 5823.615 kb on - strandat 5823.674 kb on - strand, within BT4420at 5823.688 kb on - strand, within BT4420

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Per-strain Table

Position Strand Gene LocusTag Fraction BHIS with Chlorpromazine 0.2 mM
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5,822,071 - -1.1
5,822,758 - -2.3
5,822,848 + -2.3
5,822,851 - -1.0
5,822,880 - +1.3
5,822,959 + -1.3
5,822,960 - +1.0
5,822,961 + -2.3
5,822,962 - -1.4
5,822,962 - +2.8
5,823,000 - +0.4
5,823,006 - -2.3
5,823,082 - +1.0
5,823,120 + -1.8
5,823,127 - +0.5
5,823,133 + -1.8
5,823,133 + +1.0
5,823,133 + -0.4
5,823,196 + -0.9
5,823,305 - -1.6
5,823,305 - -3.5
5,823,322 - +2.3
5,823,324 + +2.3
5,823,528 - -2.0
5,823,538 - +2.0
5,823,606 - -1.2
5,823,615 - -1.5
5,823,674 - BT4420 0.11 +0.7
5,823,688 - BT4420 0.13 +1.0

Or see this region's nucleotide sequence