Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT1473

Experiment: BHIS with Chlorpromazine 0.2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT1472 and BT1473 are separated by 11 nucleotidesBT1473 and BT1474 overlap by 1 nucleotides BT1472: BT1472 - conserved hypothetical protein (NCBI ptt file), at 1,813,936 to 1,815,108 BT1472 BT1473: BT1473 - conserved hypothetical protein (NCBI ptt file), at 1,815,120 to 1,815,575 BT1473 BT1474: BT1474 - ribosomal protein S6 modification protein-related protein (NCBI ptt file), at 1,815,575 to 1,817,041 BT1474 Position (kb) 1815 1816Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1814.176 kb on + strand, within BT1472at 1814.234 kb on + strand, within BT1472at 1814.234 kb on + strand, within BT1472at 1814.235 kb on - strand, within BT1472at 1814.368 kb on - strand, within BT1472at 1814.464 kb on + strand, within BT1472at 1814.498 kb on + strand, within BT1472at 1814.560 kb on + strand, within BT1472at 1814.561 kb on - strand, within BT1472at 1814.661 kb on - strand, within BT1472at 1814.712 kb on - strand, within BT1472at 1814.721 kb on + strand, within BT1472at 1814.729 kb on + strand, within BT1472at 1814.730 kb on - strand, within BT1472at 1814.771 kb on + strand, within BT1472at 1814.777 kb on - strand, within BT1472at 1814.777 kb on - strand, within BT1472at 1814.815 kb on + strand, within BT1472at 1814.952 kb on - strand, within BT1472at 1815.163 kb on + strandat 1815.166 kb on + strand, within BT1473at 1815.209 kb on - strand, within BT1473at 1815.211 kb on - strand, within BT1473at 1815.228 kb on - strandat 1815.266 kb on + strand, within BT1473at 1815.558 kb on + strandat 1815.559 kb on - strandat 1815.576 kb on + strandat 1815.627 kb on + strandat 1815.801 kb on + strand, within BT1474at 1815.806 kb on - strand, within BT1474at 1815.806 kb on - strand, within BT1474at 1815.883 kb on + strand, within BT1474at 1815.884 kb on - strand, within BT1474at 1815.885 kb on + strand, within BT1474at 1815.888 kb on + strandat 1815.888 kb on + strand, within BT1474at 1815.900 kb on + strand, within BT1474at 1815.900 kb on + strand, within BT1474at 1815.901 kb on - strand, within BT1474at 1815.908 kb on + strand, within BT1474at 1815.908 kb on + strand, within BT1474at 1816.051 kb on - strand, within BT1474at 1816.141 kb on + strand, within BT1474at 1816.142 kb on - strand, within BT1474at 1816.195 kb on + strand, within BT1474at 1816.277 kb on - strand, within BT1474

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Per-strain Table

Position Strand Gene LocusTag Fraction BHIS with Chlorpromazine 0.2 mM
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1,814,176 + BT1472 0.20 +2.7
1,814,234 + BT1472 0.25 -1.1
1,814,234 + BT1472 0.25 -3.7
1,814,235 - BT1472 0.25 +1.1
1,814,368 - BT1472 0.37 -0.1
1,814,464 + BT1472 0.45 -1.9
1,814,498 + BT1472 0.48 +2.7
1,814,560 + BT1472 0.53 +2.7
1,814,561 - BT1472 0.53 +2.6
1,814,661 - BT1472 0.62 -1.6
1,814,712 - BT1472 0.66 +2.5
1,814,721 + BT1472 0.67 -4.0
1,814,729 + BT1472 0.68 -3.7
1,814,730 - BT1472 0.68 +0.5
1,814,771 + BT1472 0.71 -0.1
1,814,777 - BT1472 0.72 -2.1
1,814,777 - BT1472 0.72 -0.1
1,814,815 + BT1472 0.75 -2.1
1,814,952 - BT1472 0.87 -0.1
1,815,163 + +1.7
1,815,166 + BT1473 0.10 +2.9
1,815,209 - BT1473 0.20 -2.3
1,815,211 - BT1473 0.20 -0.4
1,815,228 - -0.1
1,815,266 + BT1473 0.32 -3.5
1,815,558 + -1.6
1,815,559 - -0.1
1,815,576 + +0.1
1,815,627 + -0.1
1,815,801 + BT1474 0.15 +3.4
1,815,806 - BT1474 0.16 +3.1
1,815,806 - BT1474 0.16 -1.7
1,815,883 + BT1474 0.21 +1.9
1,815,884 - BT1474 0.21 -0.1
1,815,885 + BT1474 0.21 -1.1
1,815,888 + -1.7
1,815,888 + BT1474 0.21 -3.1
1,815,900 + BT1474 0.22 -2.4
1,815,900 + BT1474 0.22 -0.1
1,815,901 - BT1474 0.22 -2.0
1,815,908 + BT1474 0.23 +1.6
1,815,908 + BT1474 0.23 -0.1
1,816,051 - BT1474 0.32 +1.7
1,816,141 + BT1474 0.39 +1.2
1,816,142 - BT1474 0.39 -0.1
1,816,195 + BT1474 0.42 +1.8
1,816,277 - BT1474 0.48 +0.5

Or see this region's nucleotide sequence