Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_608

Experiment: Ammonium chloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_607 and Pf6N2E2_608 are separated by 132 nucleotidesPf6N2E2_608 and Pf6N2E2_609 are separated by 349 nucleotides Pf6N2E2_607 - hypothetical protein, at 685,441 to 690,153 _607 Pf6N2E2_608 - Transcriptional regulator of the arabinose operon in Shewanella, GntR family, at 690,286 to 691,005 _608 Pf6N2E2_609 - L-arabonate dehydratase (EC 4.2.1.25) (from data), at 691,355 to 693,091 _609 Position (kb) 690 691 692Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 689.336 kb on + strand, within Pf6N2E2_607at 689.336 kb on + strand, within Pf6N2E2_607at 689.336 kb on + strand, within Pf6N2E2_607at 689.337 kb on - strand, within Pf6N2E2_607at 689.522 kb on + strand, within Pf6N2E2_607at 689.522 kb on + strand, within Pf6N2E2_607at 689.522 kb on + strand, within Pf6N2E2_607at 689.522 kb on + strand, within Pf6N2E2_607at 689.528 kb on + strand, within Pf6N2E2_607at 689.528 kb on + strand, within Pf6N2E2_607at 689.529 kb on - strand, within Pf6N2E2_607at 689.638 kb on - strand, within Pf6N2E2_607at 690.197 kb on + strandat 690.197 kb on + strandat 690.224 kb on + strandat 690.224 kb on + strandat 690.225 kb on - strandat 690.225 kb on - strandat 690.226 kb on + strandat 690.226 kb on + strandat 690.226 kb on + strandat 690.227 kb on - strandat 690.227 kb on - strandat 690.228 kb on + strandat 690.228 kb on + strandat 690.228 kb on + strandat 690.228 kb on + strandat 690.228 kb on + strandat 690.228 kb on + strandat 690.228 kb on + strandat 690.228 kb on + strandat 690.228 kb on + strandat 690.228 kb on + strandat 690.228 kb on + strandat 690.228 kb on + strandat 690.229 kb on - strandat 690.229 kb on - strandat 690.229 kb on - strandat 690.229 kb on - strandat 690.229 kb on - strandat 690.229 kb on - strandat 690.229 kb on - strandat 690.229 kb on - strandat 690.229 kb on - strandat 690.280 kb on + strandat 690.280 kb on + strandat 690.281 kb on - strandat 690.281 kb on - strandat 690.285 kb on - strandat 690.285 kb on - strandat 690.759 kb on + strand, within Pf6N2E2_608at 690.759 kb on + strand, within Pf6N2E2_608at 690.759 kb on + strand, within Pf6N2E2_608at 690.759 kb on + strand, within Pf6N2E2_608at 690.759 kb on + strand, within Pf6N2E2_608at 690.759 kb on + strand, within Pf6N2E2_608at 690.760 kb on - strand, within Pf6N2E2_608at 690.760 kb on - strand, within Pf6N2E2_608at 690.809 kb on + strand, within Pf6N2E2_608at 690.809 kb on + strand, within Pf6N2E2_608at 690.810 kb on - strand, within Pf6N2E2_608at 690.872 kb on + strand, within Pf6N2E2_608at 690.873 kb on - strand, within Pf6N2E2_608at 690.873 kb on - strand, within Pf6N2E2_608at 690.907 kb on - strand, within Pf6N2E2_608at 690.998 kb on + strandat 691.047 kb on + strandat 691.048 kb on - strandat 691.119 kb on - strandat 691.197 kb on + strandat 691.198 kb on - strandat 691.290 kb on + strandat 691.291 kb on - strandat 691.291 kb on - strandat 691.374 kb on - strandat 691.446 kb on + strandat 691.446 kb on + strandat 691.446 kb on + strandat 691.446 kb on + strandat 691.447 kb on - strandat 691.685 kb on - strand, within Pf6N2E2_609at 691.833 kb on + strand, within Pf6N2E2_609at 691.834 kb on - strand, within Pf6N2E2_609at 691.834 kb on - strand, within Pf6N2E2_609at 691.951 kb on + strand, within Pf6N2E2_609at 691.951 kb on + strand, within Pf6N2E2_609

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N)
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689,336 + Pf6N2E2_607 0.83 +0.4
689,336 + Pf6N2E2_607 0.83 +0.7
689,336 + Pf6N2E2_607 0.83 +0.2
689,337 - Pf6N2E2_607 0.83 +0.2
689,522 + Pf6N2E2_607 0.87 +0.7
689,522 + Pf6N2E2_607 0.87 +0.9
689,522 + Pf6N2E2_607 0.87 -2.1
689,522 + Pf6N2E2_607 0.87 -0.3
689,528 + Pf6N2E2_607 0.87 -0.5
689,528 + Pf6N2E2_607 0.87 +0.1
689,529 - Pf6N2E2_607 0.87 -0.2
689,638 - Pf6N2E2_607 0.89 -1.2
690,197 + -0.4
690,197 + -0.2
690,224 + -0.5
690,224 + +0.0
690,225 - -0.1
690,225 - +2.0
690,226 + +1.5
690,226 + +1.5
690,226 + -0.1
690,227 - -0.3
690,227 - -0.8
690,228 + -1.9
690,228 + -0.8
690,228 + +0.5
690,228 + -0.2
690,228 + +0.7
690,228 + -1.5
690,228 + +0.2
690,228 + +0.5
690,228 + -0.2
690,228 + +0.8
690,228 + +0.5
690,228 + +0.2
690,229 - +0.3
690,229 - -2.1
690,229 - +0.5
690,229 - +1.3
690,229 - +1.2
690,229 - -0.3
690,229 - -0.7
690,229 - +0.2
690,229 - +0.9
690,280 + -0.9
690,280 + -0.3
690,281 - +0.6
690,281 - -0.9
690,285 - +1.5
690,285 - -0.3
690,759 + Pf6N2E2_608 0.66 +2.1
690,759 + Pf6N2E2_608 0.66 -0.6
690,759 + Pf6N2E2_608 0.66 -1.4
690,759 + Pf6N2E2_608 0.66 -1.3
690,759 + Pf6N2E2_608 0.66 -0.5
690,759 + Pf6N2E2_608 0.66 -2.0
690,760 - Pf6N2E2_608 0.66 -0.2
690,760 - Pf6N2E2_608 0.66 -2.0
690,809 + Pf6N2E2_608 0.73 -1.2
690,809 + Pf6N2E2_608 0.73 -0.2
690,810 - Pf6N2E2_608 0.73 -3.2
690,872 + Pf6N2E2_608 0.81 +1.1
690,873 - Pf6N2E2_608 0.82 +0.5
690,873 - Pf6N2E2_608 0.82 -2.2
690,907 - Pf6N2E2_608 0.86 +1.5
690,998 + -1.1
691,047 + -0.0
691,048 - -0.5
691,119 - +0.2
691,197 + +1.7
691,198 - +0.5
691,290 + -1.1
691,291 - +0.2
691,291 - +0.5
691,374 - -0.4
691,446 + +0.1
691,446 + +0.9
691,446 + +1.1
691,446 + +0.9
691,447 - +0.5
691,685 - Pf6N2E2_609 0.19 -3.0
691,833 + Pf6N2E2_609 0.28 +0.4
691,834 - Pf6N2E2_609 0.28 -1.6
691,834 - Pf6N2E2_609 0.28 -0.0
691,951 + Pf6N2E2_609 0.34 +0.7
691,951 + Pf6N2E2_609 0.34 -1.1

Or see this region's nucleotide sequence