Experiment: Ammonium chloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1690 and Pf6N2E2_1691 are separated by 566 nucleotides Pf6N2E2_1691 and Pf6N2E2_1692 are separated by 241 nucleotides Pf6N2E2_1692 and Pf6N2E2_1693 are separated by 16 nucleotides
Pf6N2E2_1690 - Mobile element protein, at 1,999,357 to 2,000,526
_1690
Pf6N2E2_1691 - hypothetical protein, at 2,001,093 to 2,001,335
_1691
Pf6N2E2_1692 - transporter, LysE family, at 2,001,577 to 2,002,218
_1692
Pf6N2E2_1693 - hypothetical protein, at 2,002,235 to 2,002,354
_1693
Position (kb)
2001
2002 Strain fitness (log2 ratio)
-1
0
1 at 2000.619 kb on + strand at 2000.712 kb on - strand at 2000.712 kb on - strand at 2000.750 kb on - strand at 2000.969 kb on - strand at 2001.017 kb on + strand at 2001.088 kb on + strand at 2001.089 kb on - strand at 2001.094 kb on + strand at 2001.094 kb on + strand at 2001.094 kb on + strand at 2001.094 kb on + strand at 2001.094 kb on + strand at 2001.095 kb on - strand at 2001.125 kb on + strand, within Pf6N2E2_1691 at 2001.126 kb on - strand, within Pf6N2E2_1691 at 2001.158 kb on + strand, within Pf6N2E2_1691 at 2001.202 kb on + strand, within Pf6N2E2_1691 at 2001.348 kb on + strand at 2001.349 kb on - strand at 2001.351 kb on + strand at 2001.351 kb on + strand at 2001.351 kb on + strand at 2001.395 kb on - strand at 2001.512 kb on + strand at 2001.603 kb on + strand at 2001.924 kb on - strand, within Pf6N2E2_1692 at 2001.924 kb on - strand, within Pf6N2E2_1692 at 2001.924 kb on - strand, within Pf6N2E2_1692 at 2001.925 kb on + strand, within Pf6N2E2_1692 at 2001.926 kb on - strand, within Pf6N2E2_1692 at 2002.084 kb on + strand, within Pf6N2E2_1692 at 2002.085 kb on - strand, within Pf6N2E2_1692
Per-strain Table
Position Strand Gene LocusTag Fraction Ammonium chloride (N) remove 2,000,619 + -0.8 2,000,712 - +1.0 2,000,712 - +0.1 2,000,750 - +0.6 2,000,969 - +0.9 2,001,017 + +0.2 2,001,088 + +0.8 2,001,089 - +0.2 2,001,094 + -0.2 2,001,094 + -0.4 2,001,094 + +0.0 2,001,094 + +1.1 2,001,094 + -0.0 2,001,095 - +1.3 2,001,125 + Pf6N2E2_1691 0.13 -0.0 2,001,126 - Pf6N2E2_1691 0.14 -0.7 2,001,158 + Pf6N2E2_1691 0.27 -0.7 2,001,202 + Pf6N2E2_1691 0.45 -1.7 2,001,348 + +0.9 2,001,349 - -0.5 2,001,351 + +0.3 2,001,351 + -0.2 2,001,351 + +0.0 2,001,395 - -0.7 2,001,512 + +0.1 2,001,603 + -0.5 2,001,924 - Pf6N2E2_1692 0.54 +1.1 2,001,924 - Pf6N2E2_1692 0.54 -0.4 2,001,924 - Pf6N2E2_1692 0.54 -0.5 2,001,925 + Pf6N2E2_1692 0.54 +0.3 2,001,926 - Pf6N2E2_1692 0.54 +0.5 2,002,084 + Pf6N2E2_1692 0.79 +0.5 2,002,085 - Pf6N2E2_1692 0.79 -1.6
Or see this region's nucleotide sequence