Experiment: Pimelic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06450 and H281DRAFT_06451 are separated by 148 nucleotides H281DRAFT_06451 and H281DRAFT_06452 overlap by 8 nucleotides H281DRAFT_06452 and H281DRAFT_06453 are separated by 503 nucleotides
H281DRAFT_06450: H281DRAFT_06450 - ATP-dependent Clp protease ATP-binding subunit ClpC, at 55,671 to 58,448
_06450
H281DRAFT_06451: H281DRAFT_06451 - Uncharacterized protein, linocin/CFP29 family, at 58,597 to 59,400
_06451
H281DRAFT_06452: H281DRAFT_06452 - putative iron-dependent peroxidase, at 59,393 to 60,439
_06452
H281DRAFT_06453: H281DRAFT_06453 - Protein required for attachment to host cells, at 60,943 to 61,338
_06453
Position (kb) 59
60
61 Strain fitness (log2 ratio) -1
0
1
2 at 58.566 kb on - strand at 58.668 kb on - strand at 58.668 kb on - strand at 58.690 kb on - strand, within H281DRAFT_06451 at 58.698 kb on + strand, within H281DRAFT_06451 at 58.756 kb on + strand at 58.759 kb on + strand, within H281DRAFT_06451 at 58.869 kb on - strand, within H281DRAFT_06451 at 58.896 kb on - strand, within H281DRAFT_06451 at 59.405 kb on + strand at 59.406 kb on - strand at 59.639 kb on - strand, within H281DRAFT_06452 at 59.670 kb on + strand, within H281DRAFT_06452 at 59.670 kb on + strand, within H281DRAFT_06452 at 59.671 kb on - strand, within H281DRAFT_06452 at 59.798 kb on + strand at 59.798 kb on + strand, within H281DRAFT_06452 at 59.813 kb on + strand, within H281DRAFT_06452 at 59.886 kb on + strand, within H281DRAFT_06452 at 59.904 kb on + strand, within H281DRAFT_06452 at 59.905 kb on - strand, within H281DRAFT_06452 at 60.022 kb on - strand, within H281DRAFT_06452 at 60.102 kb on - strand, within H281DRAFT_06452 at 60.453 kb on + strand at 60.454 kb on - strand at 60.454 kb on - strand at 60.463 kb on + strand at 60.464 kb on - strand at 60.700 kb on - strand at 60.884 kb on - strand at 60.968 kb on - strand at 60.993 kb on - strand, within H281DRAFT_06453 at 61.002 kb on + strand, within H281DRAFT_06453 at 61.002 kb on + strand, within H281DRAFT_06453 at 61.051 kb on + strand, within H281DRAFT_06453 at 61.052 kb on - strand, within H281DRAFT_06453
Per-strain Table
Position Strand Gene LocusTag Fraction Pimelic (C) remove 58,566 - +1.2 58,668 - +0.1 58,668 - +0.2 58,690 - H281DRAFT_06451 0.12 -0.1 58,698 + H281DRAFT_06451 0.13 -0.1 58,756 + -0.8 58,759 + H281DRAFT_06451 0.20 +0.3 58,869 - H281DRAFT_06451 0.34 +0.4 58,896 - H281DRAFT_06451 0.37 -0.5 59,405 + -0.3 59,406 - -0.5 59,639 - H281DRAFT_06452 0.23 +0.1 59,670 + H281DRAFT_06452 0.26 +1.3 59,670 + H281DRAFT_06452 0.26 +0.2 59,671 - H281DRAFT_06452 0.27 +0.3 59,798 + +2.2 59,798 + H281DRAFT_06452 0.39 +0.1 59,813 + H281DRAFT_06452 0.40 +1.0 59,886 + H281DRAFT_06452 0.47 -0.2 59,904 + H281DRAFT_06452 0.49 +1.6 59,905 - H281DRAFT_06452 0.49 +0.5 60,022 - H281DRAFT_06452 0.60 +0.6 60,102 - H281DRAFT_06452 0.68 +0.1 60,453 + +0.6 60,454 - +0.0 60,454 - -1.1 60,463 + -0.6 60,464 - -0.3 60,700 - -0.9 60,884 - -0.1 60,968 - +0.1 60,993 - H281DRAFT_06453 0.13 +1.8 61,002 + H281DRAFT_06453 0.15 -0.1 61,002 + H281DRAFT_06453 0.15 +0.0 61,051 + H281DRAFT_06453 0.27 -0.0 61,052 - H281DRAFT_06453 0.28 -0.2
Or see this region's nucleotide sequence