Experiment: Pimelic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06355 and H281DRAFT_06356 overlap by 4 nucleotides H281DRAFT_06356 and H281DRAFT_06357 are separated by 11 nucleotides H281DRAFT_06357 and H281DRAFT_06358 are separated by 36 nucleotides
H281DRAFT_06355: H281DRAFT_06355 - 4-oxalomesaconate hydratase, at 29,348 to 30,388
_06355
H281DRAFT_06356: H281DRAFT_06356 - RraA famliy, at 30,385 to 31,053
_06356
H281DRAFT_06357: H281DRAFT_06357 - hypothetical protein, at 31,065 to 31,463
_06357
H281DRAFT_06358: H281DRAFT_06358 - ABC-type nitrate/sulfonate/bicarbonate transport system, substrate-binding protein, at 31,500 to 32,462
_06358
Position (kb) 30
31
32 Strain fitness (log2 ratio) -1
0
1 at 29.713 kb on + strand, within H281DRAFT_06355 at 30.089 kb on + strand, within H281DRAFT_06355 at 30.125 kb on + strand, within H281DRAFT_06355 at 30.258 kb on - strand, within H281DRAFT_06355 at 30.303 kb on + strand at 30.305 kb on + strand at 30.305 kb on + strand at 30.306 kb on - strand at 30.306 kb on - strand at 30.379 kb on + strand at 30.380 kb on - strand at 30.384 kb on + strand at 30.524 kb on - strand, within H281DRAFT_06356 at 30.809 kb on - strand, within H281DRAFT_06356 at 31.075 kb on - strand at 31.281 kb on + strand, within H281DRAFT_06357 at 31.282 kb on - strand, within H281DRAFT_06357 at 31.368 kb on + strand, within H281DRAFT_06357 at 31.824 kb on - strand, within H281DRAFT_06358 at 31.833 kb on + strand, within H281DRAFT_06358 at 31.898 kb on - strand, within H281DRAFT_06358 at 32.023 kb on + strand, within H281DRAFT_06358
Per-strain Table
Position Strand Gene LocusTag Fraction Pimelic (C) remove 29,713 + H281DRAFT_06355 0.35 +1.2 30,089 + H281DRAFT_06355 0.71 +0.1 30,125 + H281DRAFT_06355 0.75 +0.1 30,258 - H281DRAFT_06355 0.87 -0.8 30,303 + +0.4 30,305 + +0.8 30,305 + +0.3 30,306 - -0.2 30,306 - -0.0 30,379 + -0.3 30,380 - +0.1 30,384 + -0.1 30,524 - H281DRAFT_06356 0.21 +0.4 30,809 - H281DRAFT_06356 0.63 +0.8 31,075 - -0.0 31,281 + H281DRAFT_06357 0.54 +0.8 31,282 - H281DRAFT_06357 0.54 -0.3 31,368 + H281DRAFT_06357 0.76 +0.7 31,824 - H281DRAFT_06358 0.34 +0.4 31,833 + H281DRAFT_06358 0.35 +0.1 31,898 - H281DRAFT_06358 0.41 +0.1 32,023 + H281DRAFT_06358 0.54 -0.4
Or see this region's nucleotide sequence