Experiment: Pimelic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06288 and H281DRAFT_06289 overlap by 4 nucleotides H281DRAFT_06289 and H281DRAFT_06290 are separated by 247 nucleotides
H281DRAFT_06288: H281DRAFT_06288 - UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase, at 69,581 to 70,975
_06288
H281DRAFT_06289: H281DRAFT_06289 - hypothetical protein, at 70,972 to 71,574
_06289
H281DRAFT_06290: H281DRAFT_06290 - exoribonuclease-2, at 71,822 to 73,960
_06290
Position (kb) 70
71
72 Strain fitness (log2 ratio) -2
-1
0
1
2 at 70.067 kb on + strand, within H281DRAFT_06288 at 70.067 kb on + strand, within H281DRAFT_06288 at 70.376 kb on + strand, within H281DRAFT_06288 at 70.376 kb on + strand, within H281DRAFT_06288 at 70.377 kb on - strand, within H281DRAFT_06288 at 70.554 kb on + strand, within H281DRAFT_06288 at 70.555 kb on - strand, within H281DRAFT_06288 at 70.555 kb on - strand, within H281DRAFT_06288 at 70.571 kb on + strand, within H281DRAFT_06288 at 70.648 kb on + strand at 70.648 kb on + strand at 70.648 kb on + strand, within H281DRAFT_06288 at 70.981 kb on + strand at 70.981 kb on + strand at 70.981 kb on + strand at 70.982 kb on - strand at 71.194 kb on + strand, within H281DRAFT_06289 at 71.194 kb on + strand, within H281DRAFT_06289 at 71.194 kb on + strand, within H281DRAFT_06289 at 71.381 kb on - strand, within H281DRAFT_06289 at 71.383 kb on + strand, within H281DRAFT_06289 at 71.383 kb on + strand, within H281DRAFT_06289 at 71.383 kb on + strand, within H281DRAFT_06289 at 71.384 kb on - strand, within H281DRAFT_06289 at 71.384 kb on - strand, within H281DRAFT_06289 at 71.384 kb on - strand, within H281DRAFT_06289 at 71.384 kb on - strand, within H281DRAFT_06289 at 71.457 kb on + strand, within H281DRAFT_06289 at 71.457 kb on + strand, within H281DRAFT_06289 at 71.457 kb on + strand, within H281DRAFT_06289 at 71.503 kb on + strand, within H281DRAFT_06289 at 71.503 kb on + strand, within H281DRAFT_06289 at 71.504 kb on - strand, within H281DRAFT_06289 at 71.504 kb on - strand, within H281DRAFT_06289 at 71.582 kb on + strand at 71.714 kb on + strand at 71.714 kb on + strand at 71.715 kb on - strand at 71.715 kb on - strand at 71.715 kb on - strand at 71.717 kb on + strand at 71.718 kb on - strand at 71.718 kb on - strand at 71.771 kb on - strand at 71.816 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pimelic (C) remove 70,067 + H281DRAFT_06288 0.35 -1.3 70,067 + H281DRAFT_06288 0.35 -2.1 70,376 + H281DRAFT_06288 0.57 -1.1 70,376 + H281DRAFT_06288 0.57 -2.2 70,377 - H281DRAFT_06288 0.57 -1.9 70,554 + H281DRAFT_06288 0.70 -2.4 70,555 - H281DRAFT_06288 0.70 -2.4 70,555 - H281DRAFT_06288 0.70 -1.9 70,571 + H281DRAFT_06288 0.71 -2.5 70,648 + -0.9 70,648 + -1.2 70,648 + H281DRAFT_06288 0.76 -1.1 70,981 + +0.7 70,981 + +1.0 70,981 + +0.7 70,982 - +0.5 71,194 + H281DRAFT_06289 0.37 +1.0 71,194 + H281DRAFT_06289 0.37 +0.0 71,194 + H281DRAFT_06289 0.37 +0.7 71,381 - H281DRAFT_06289 0.68 +1.0 71,383 + H281DRAFT_06289 0.68 +1.2 71,383 + H281DRAFT_06289 0.68 +0.1 71,383 + H281DRAFT_06289 0.68 +1.2 71,384 - H281DRAFT_06289 0.68 -0.1 71,384 - H281DRAFT_06289 0.68 +0.4 71,384 - H281DRAFT_06289 0.68 +0.4 71,384 - H281DRAFT_06289 0.68 +0.8 71,457 + H281DRAFT_06289 0.80 +0.4 71,457 + H281DRAFT_06289 0.80 +1.2 71,457 + H281DRAFT_06289 0.80 +1.0 71,503 + H281DRAFT_06289 0.88 +0.4 71,503 + H281DRAFT_06289 0.88 -0.4 71,504 - H281DRAFT_06289 0.88 -0.3 71,504 - H281DRAFT_06289 0.88 +1.9 71,582 + +0.7 71,714 + +0.2 71,714 + -1.5 71,715 - +0.2 71,715 - +0.8 71,715 - +1.0 71,717 + +0.3 71,718 - -0.0 71,718 - +0.1 71,771 - +0.3 71,816 + +0.6
Or see this region's nucleotide sequence