Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05992

Experiment: Pimelic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05991 and H281DRAFT_05992 are separated by 26 nucleotidesH281DRAFT_05992 and H281DRAFT_05993 are separated by 1 nucleotides H281DRAFT_05991: H281DRAFT_05991 - Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase, at 133,812 to 135,200 _05991 H281DRAFT_05992: H281DRAFT_05992 - MFS transporter, MHS family, proline/betaine transporter, at 135,227 to 136,528 _05992 H281DRAFT_05993: H281DRAFT_05993 - Kynureninase, at 136,530 to 137,663 _05993 Position (kb) 135 136 137Strain fitness (log2 ratio) -1 0 1at 134.448 kb on - strand, within H281DRAFT_05991at 135.438 kb on - strand, within H281DRAFT_05992at 135.619 kb on + strand, within H281DRAFT_05992at 135.820 kb on + strand, within H281DRAFT_05992at 135.821 kb on - strand, within H281DRAFT_05992at 135.854 kb on + strand, within H281DRAFT_05992at 135.855 kb on - strand, within H281DRAFT_05992at 135.855 kb on - strand, within H281DRAFT_05992at 136.287 kb on - strand, within H281DRAFT_05992at 136.455 kb on - strandat 136.499 kb on + strandat 136.527 kb on - strandat 136.527 kb on - strandat 136.930 kb on - strand, within H281DRAFT_05993

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Per-strain Table

Position Strand Gene LocusTag Fraction Pimelic (C)
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134,448 - H281DRAFT_05991 0.46 +1.4
135,438 - H281DRAFT_05992 0.16 +0.3
135,619 + H281DRAFT_05992 0.30 +0.5
135,820 + H281DRAFT_05992 0.46 -0.8
135,821 - H281DRAFT_05992 0.46 -0.7
135,854 + H281DRAFT_05992 0.48 +0.1
135,855 - H281DRAFT_05992 0.48 -0.6
135,855 - H281DRAFT_05992 0.48 -0.2
136,287 - H281DRAFT_05992 0.81 -0.4
136,455 - -1.2
136,499 + -0.2
136,527 - -0.1
136,527 - +0.2
136,930 - H281DRAFT_05993 0.35 -0.9

Or see this region's nucleotide sequence