Experiment: Pimelic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05950 and H281DRAFT_05951 are separated by 74 nucleotides H281DRAFT_05951 and H281DRAFT_05952 are separated by 139 nucleotides H281DRAFT_05952 and H281DRAFT_05953 are separated by 150 nucleotides
H281DRAFT_05950: H281DRAFT_05950 - monosaccharide ABC transporter substrate-binding protein, CUT2 family, at 90,191 to 91,213
_05950
H281DRAFT_05951: H281DRAFT_05951 - NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family, at 91,288 to 92,001
_05951
H281DRAFT_05952: H281DRAFT_05952 - transcriptional regulator, LysR family, at 92,141 to 93,082
_05952
H281DRAFT_05953: H281DRAFT_05953 - Predicted metal-dependent hydrolase, TIM-barrel fold, at 93,233 to 94,165
_05953
Position (kb) 92
93
94 Strain fitness (log2 ratio) -1
0
1 at 91.169 kb on + strand at 91.170 kb on - strand at 91.357 kb on + strand at 91.357 kb on + strand at 91.358 kb on - strand at 91.358 kb on - strand at 91.358 kb on - strand at 91.867 kb on - strand, within H281DRAFT_05951 at 91.867 kb on - strand, within H281DRAFT_05951 at 91.879 kb on + strand at 91.884 kb on + strand, within H281DRAFT_05951 at 92.717 kb on + strand, within H281DRAFT_05952 at 92.717 kb on + strand, within H281DRAFT_05952 at 92.812 kb on + strand, within H281DRAFT_05952 at 93.256 kb on + strand at 93.574 kb on + strand, within H281DRAFT_05953 at 93.658 kb on + strand, within H281DRAFT_05953 at 93.877 kb on - strand, within H281DRAFT_05953 at 94.003 kb on - strand, within H281DRAFT_05953
Per-strain Table
Position Strand Gene LocusTag Fraction Pimelic (C) remove 91,169 + +0.4 91,170 - -0.3 91,357 + +0.4 91,357 + -0.3 91,358 - +0.3 91,358 - -0.7 91,358 - +0.8 91,867 - H281DRAFT_05951 0.81 +0.2 91,867 - H281DRAFT_05951 0.81 -0.2 91,879 + +1.0 91,884 + H281DRAFT_05951 0.83 +0.0 92,717 + H281DRAFT_05952 0.61 +0.5 92,717 + H281DRAFT_05952 0.61 +0.3 92,812 + H281DRAFT_05952 0.71 +1.0 93,256 + +0.4 93,574 + H281DRAFT_05953 0.37 -0.3 93,658 + H281DRAFT_05953 0.46 -0.3 93,877 - H281DRAFT_05953 0.69 +0.0 94,003 - H281DRAFT_05953 0.83 -0.1
Or see this region's nucleotide sequence