Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05905

Experiment: Pimelic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05904 and H281DRAFT_05905 are separated by 274 nucleotidesH281DRAFT_05905 and H281DRAFT_05906 are separated by 318 nucleotides H281DRAFT_05904: H281DRAFT_05904 - transcriptional regulator, RpiR family, at 40,096 to 40,950 _05904 H281DRAFT_05905: H281DRAFT_05905 - hypothetical protein, at 41,225 to 41,434 _05905 H281DRAFT_05906: H281DRAFT_05906 - hypothetical protein, at 41,753 to 42,961 _05906 Position (kb) 41 42Strain fitness (log2 ratio) -1 0 1 2 3 4at 40.620 kb on + strand, within H281DRAFT_05904at 40.620 kb on + strand, within H281DRAFT_05904at 41.001 kb on + strandat 41.176 kb on + strandat 41.298 kb on - strand, within H281DRAFT_05905at 41.456 kb on - strandat 41.469 kb on + strandat 41.564 kb on - strandat 41.600 kb on + strandat 41.609 kb on + strandat 41.704 kb on - strandat 41.730 kb on + strandat 41.730 kb on + strandat 41.730 kb on + strandat 41.731 kb on - strandat 41.731 kb on - strandat 41.739 kb on - strandat 41.739 kb on - strandat 42.052 kb on - strand, within H281DRAFT_05906at 42.307 kb on - strand, within H281DRAFT_05906at 42.320 kb on - strand, within H281DRAFT_05906at 42.323 kb on + strand, within H281DRAFT_05906at 42.324 kb on - strand, within H281DRAFT_05906

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Per-strain Table

Position Strand Gene LocusTag Fraction Pimelic (C)
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40,620 + H281DRAFT_05904 0.61 -0.9
40,620 + H281DRAFT_05904 0.61 +0.7
41,001 + +1.0
41,176 + +0.2
41,298 - H281DRAFT_05905 0.35 +0.5
41,456 - +0.9
41,469 + +0.2
41,564 - +0.1
41,600 + +4.4
41,609 + -1.0
41,704 - +0.5
41,730 + +0.1
41,730 + +0.0
41,730 + -0.2
41,731 - +1.0
41,731 - -0.1
41,739 - +0.0
41,739 - +0.4
42,052 - H281DRAFT_05906 0.25 -0.0
42,307 - H281DRAFT_05906 0.46 +0.7
42,320 - H281DRAFT_05906 0.47 +0.3
42,323 + H281DRAFT_05906 0.47 -0.1
42,324 - H281DRAFT_05906 0.47 -0.3

Or see this region's nucleotide sequence