Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05314

Experiment: Pimelic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05313 and H281DRAFT_05314 are separated by 216 nucleotidesH281DRAFT_05314 and H281DRAFT_05315 are separated by 64 nucleotides H281DRAFT_05313: H281DRAFT_05313 - Polygalacturonase, at 61,521 to 63,524 _05313 H281DRAFT_05314: H281DRAFT_05314 - 2-hydroxy-3-oxopropionate reductase, at 63,741 to 64,634 _05314 H281DRAFT_05315: H281DRAFT_05315 - 5-dehydro-4-deoxy-D-glucarate aldolase (EC 4.1.2.20), at 64,699 to 65,505 _05315 Position (kb) 63 64 65Strain fitness (log2 ratio) -1 0 1at 62.943 kb on + strand, within H281DRAFT_05313at 63.972 kb on - strand, within H281DRAFT_05314at 64.132 kb on - strand, within H281DRAFT_05314at 64.311 kb on + strand, within H281DRAFT_05314at 64.678 kb on - strandat 65.076 kb on - strand, within H281DRAFT_05315at 65.239 kb on - strand, within H281DRAFT_05315at 65.463 kb on + strandat 65.464 kb on - strandat 65.480 kb on + strandat 65.538 kb on + strandat 65.539 kb on - strandat 65.615 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pimelic (C)
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62,943 + H281DRAFT_05313 0.71 +0.8
63,972 - H281DRAFT_05314 0.26 +0.6
64,132 - H281DRAFT_05314 0.44 +0.1
64,311 + H281DRAFT_05314 0.64 +0.8
64,678 - +0.6
65,076 - H281DRAFT_05315 0.47 +0.0
65,239 - H281DRAFT_05315 0.67 -0.8
65,463 + +0.3
65,464 - +0.2
65,480 + -0.3
65,538 + -1.1
65,539 - -0.3
65,615 - -0.2

Or see this region's nucleotide sequence