Experiment: Pimelic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05244 and H281DRAFT_05245 are separated by 74 nucleotides H281DRAFT_05245 and H281DRAFT_05246 are separated by 379 nucleotides H281DRAFT_05246 and H281DRAFT_05247 are separated by 23 nucleotides
H281DRAFT_05244: H281DRAFT_05244 - thioredoxin reductase (NADPH), at 211,804 to 212,949
_05244
H281DRAFT_05245: H281DRAFT_05245 - hypothetical protein, at 213,024 to 213,260
_05245
H281DRAFT_05246: H281DRAFT_05246 - Predicted membrane protein, at 213,640 to 214,134
_05246
H281DRAFT_05247: H281DRAFT_05247 - drug resistance transporter, EmrB/QacA subfamily, at 214,158 to 215,555
_05247
Position (kb) 213
214
215 Strain fitness (log2 ratio) -1
0
1
2 at 212.663 kb on - strand, within H281DRAFT_05244 at 212.736 kb on + strand, within H281DRAFT_05244 at 212.736 kb on + strand, within H281DRAFT_05244 at 212.737 kb on - strand, within H281DRAFT_05244 at 212.737 kb on - strand, within H281DRAFT_05244 at 212.737 kb on - strand, within H281DRAFT_05244 at 212.746 kb on + strand, within H281DRAFT_05244 at 212.747 kb on - strand, within H281DRAFT_05244 at 212.795 kb on - strand, within H281DRAFT_05244 at 212.861 kb on - strand at 212.861 kb on - strand at 212.861 kb on - strand at 212.866 kb on + strand at 212.872 kb on + strand at 213.291 kb on + strand at 213.291 kb on + strand at 213.292 kb on - strand at 213.292 kb on - strand at 213.624 kb on - strand at 213.624 kb on - strand at 214.028 kb on + strand, within H281DRAFT_05246 at 214.028 kb on + strand, within H281DRAFT_05246 at 214.028 kb on + strand, within H281DRAFT_05246 at 214.029 kb on - strand, within H281DRAFT_05246 at 214.420 kb on + strand, within H281DRAFT_05247 at 214.421 kb on - strand, within H281DRAFT_05247 at 214.826 kb on - strand, within H281DRAFT_05247 at 214.834 kb on + strand, within H281DRAFT_05247 at 214.834 kb on + strand, within H281DRAFT_05247 at 214.835 kb on - strand, within H281DRAFT_05247 at 214.835 kb on - strand, within H281DRAFT_05247 at 215.023 kb on + strand, within H281DRAFT_05247 at 215.023 kb on + strand, within H281DRAFT_05247 at 215.024 kb on - strand, within H281DRAFT_05247 at 215.024 kb on - strand, within H281DRAFT_05247 at 215.080 kb on + strand, within H281DRAFT_05247 at 215.080 kb on + strand, within H281DRAFT_05247 at 215.081 kb on - strand, within H281DRAFT_05247 at 215.081 kb on - strand, within H281DRAFT_05247 at 215.081 kb on - strand, within H281DRAFT_05247
Per-strain Table
Position Strand Gene LocusTag Fraction Pimelic (C) remove 212,663 - H281DRAFT_05244 0.75 -0.5 212,736 + H281DRAFT_05244 0.81 +1.2 212,736 + H281DRAFT_05244 0.81 +0.5 212,737 - H281DRAFT_05244 0.81 -0.5 212,737 - H281DRAFT_05244 0.81 +0.2 212,737 - H281DRAFT_05244 0.81 +0.1 212,746 + H281DRAFT_05244 0.82 +0.3 212,747 - H281DRAFT_05244 0.82 +0.4 212,795 - H281DRAFT_05244 0.86 +0.4 212,861 - -1.5 212,861 - +0.7 212,861 - -0.5 212,866 + -0.2 212,872 + +0.3 213,291 + +0.2 213,291 + -0.4 213,292 - +0.2 213,292 - +0.2 213,624 - +0.2 213,624 - +2.0 214,028 + H281DRAFT_05246 0.78 +0.2 214,028 + H281DRAFT_05246 0.78 +0.4 214,028 + H281DRAFT_05246 0.78 +1.0 214,029 - H281DRAFT_05246 0.79 +0.8 214,420 + H281DRAFT_05247 0.19 +0.2 214,421 - H281DRAFT_05247 0.19 -0.0 214,826 - H281DRAFT_05247 0.48 +0.5 214,834 + H281DRAFT_05247 0.48 +0.8 214,834 + H281DRAFT_05247 0.48 +0.3 214,835 - H281DRAFT_05247 0.48 +0.2 214,835 - H281DRAFT_05247 0.48 -0.7 215,023 + H281DRAFT_05247 0.62 +0.6 215,023 + H281DRAFT_05247 0.62 +0.9 215,024 - H281DRAFT_05247 0.62 +0.1 215,024 - H281DRAFT_05247 0.62 +0.0 215,080 + H281DRAFT_05247 0.66 +0.0 215,080 + H281DRAFT_05247 0.66 +0.6 215,081 - H281DRAFT_05247 0.66 +0.3 215,081 - H281DRAFT_05247 0.66 +0.4 215,081 - H281DRAFT_05247 0.66 +0.2
Or see this region's nucleotide sequence