Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05044

Experiment: Pimelic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05043 and H281DRAFT_05044 are separated by 107 nucleotidesH281DRAFT_05044 and H281DRAFT_05045 are separated by 89 nucleotides H281DRAFT_05043: H281DRAFT_05043 - RNA polymerase sigma-70 factor, ECF subfamily, at 231,694 to 232,206 _05043 H281DRAFT_05044: H281DRAFT_05044 - Nucleotide-binding universal stress protein, UspA family, at 232,314 to 232,745 _05044 H281DRAFT_05045: H281DRAFT_05045 - amidase, at 232,835 to 234,235 _05045 Position (kb) 232 233Strain fitness (log2 ratio) -1 0 1at 231.331 kb on - strandat 231.331 kb on - strandat 231.341 kb on + strandat 231.367 kb on - strandat 231.497 kb on + strandat 231.498 kb on - strandat 232.500 kb on - strand, within H281DRAFT_05044at 232.608 kb on - strand, within H281DRAFT_05044at 232.837 kb on - strandat 233.411 kb on + strand, within H281DRAFT_05045at 233.497 kb on + strand, within H281DRAFT_05045at 233.497 kb on + strand, within H281DRAFT_05045at 233.682 kb on + strand, within H281DRAFT_05045

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Per-strain Table

Position Strand Gene LocusTag Fraction Pimelic (C)
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231,331 - +0.9
231,331 - +0.2
231,341 + -0.9
231,367 - +0.7
231,497 + +0.0
231,498 - -0.3
232,500 - H281DRAFT_05044 0.43 +0.4
232,608 - H281DRAFT_05044 0.68 +1.1
232,837 - -0.7
233,411 + H281DRAFT_05045 0.41 +0.4
233,497 + H281DRAFT_05045 0.47 +1.3
233,497 + H281DRAFT_05045 0.47 +0.5
233,682 + H281DRAFT_05045 0.60 -0.8

Or see this region's nucleotide sequence