Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04845

Experiment: Pimelic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04844 and H281DRAFT_04845 are separated by 55 nucleotidesH281DRAFT_04845 and H281DRAFT_04846 are separated by 301 nucleotidesH281DRAFT_04846 and H281DRAFT_04847 are separated by 139 nucleotides H281DRAFT_04844: H281DRAFT_04844 - Glycosyltransferase, GT2 family, at 284,737 to 286,635 _04844 H281DRAFT_04845: H281DRAFT_04845 - dolichol-phosphate mannosyltransferase, at 286,691 to 287,821 _04845 H281DRAFT_04846: H281DRAFT_04846 - Putative flippase GtrA (transmembrane translocase of bactoprenol-linked glucose), at 288,123 to 288,578 _04846 H281DRAFT_04847: H281DRAFT_04847 - mannose-1-phosphate guanylyltransferase (GDP) (EC 2.7.7.22)/mannose-6-phosphate isomerase, type 2 (EC 5.3.1.8), at 288,718 to 290,151 _04847 Position (kb) 286 287 288Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 285.741 kb on - strand, within H281DRAFT_04844at 285.795 kb on - strand, within H281DRAFT_04844at 285.863 kb on + strandat 285.864 kb on - strand, within H281DRAFT_04844at 285.887 kb on - strand, within H281DRAFT_04844at 285.887 kb on - strand, within H281DRAFT_04844at 285.959 kb on + strand, within H281DRAFT_04844at 285.992 kb on + strand, within H281DRAFT_04844at 286.089 kb on - strand, within H281DRAFT_04844at 286.183 kb on - strand, within H281DRAFT_04844at 286.183 kb on - strand, within H281DRAFT_04844at 286.215 kb on + strand, within H281DRAFT_04844at 286.215 kb on + strand, within H281DRAFT_04844at 286.236 kb on - strandat 286.307 kb on + strand, within H281DRAFT_04844at 286.348 kb on + strand, within H281DRAFT_04844at 286.364 kb on + strand, within H281DRAFT_04844at 286.364 kb on + strand, within H281DRAFT_04844at 286.365 kb on - strand, within H281DRAFT_04844at 286.379 kb on - strand, within H281DRAFT_04844at 286.399 kb on - strand, within H281DRAFT_04844at 286.399 kb on - strand, within H281DRAFT_04844at 286.417 kb on + strand, within H281DRAFT_04844at 286.457 kb on + strandat 286.457 kb on + strandat 286.625 kb on + strandat 286.626 kb on - strandat 286.667 kb on + strandat 286.668 kb on - strandat 286.668 kb on - strandat 286.668 kb on - strandat 286.693 kb on - strandat 286.725 kb on + strandat 286.825 kb on + strand, within H281DRAFT_04845at 286.845 kb on + strand, within H281DRAFT_04845at 286.913 kb on - strand, within H281DRAFT_04845at 286.913 kb on - strand, within H281DRAFT_04845at 286.966 kb on + strand, within H281DRAFT_04845at 286.967 kb on - strand, within H281DRAFT_04845at 286.967 kb on - strand, within H281DRAFT_04845at 287.055 kb on - strand, within H281DRAFT_04845at 287.109 kb on + strand, within H281DRAFT_04845at 287.110 kb on - strand, within H281DRAFT_04845at 287.393 kb on - strand, within H281DRAFT_04845at 287.413 kb on - strand, within H281DRAFT_04845at 287.457 kb on + strand, within H281DRAFT_04845at 287.458 kb on - strand, within H281DRAFT_04845at 287.585 kb on - strand, within H281DRAFT_04845at 287.585 kb on - strand, within H281DRAFT_04845at 287.585 kb on - strand, within H281DRAFT_04845at 287.585 kb on - strand, within H281DRAFT_04845at 287.585 kb on - strand, within H281DRAFT_04845at 287.631 kb on + strand, within H281DRAFT_04845at 287.632 kb on - strand, within H281DRAFT_04845at 287.647 kb on + strand, within H281DRAFT_04845at 287.647 kb on + strand, within H281DRAFT_04845at 287.647 kb on + strand, within H281DRAFT_04845at 287.648 kb on - strand, within H281DRAFT_04845at 287.648 kb on - strand, within H281DRAFT_04845at 287.648 kb on - strand, within H281DRAFT_04845at 287.658 kb on - strand, within H281DRAFT_04845at 287.737 kb on + strandat 287.756 kb on - strandat 287.756 kb on - strandat 287.889 kb on + strandat 287.889 kb on + strandat 287.913 kb on + strandat 287.929 kb on + strandat 287.929 kb on + strandat 287.929 kb on + strandat 287.930 kb on - strandat 288.027 kb on + strandat 288.027 kb on + strandat 288.028 kb on - strandat 288.028 kb on - strandat 288.117 kb on + strandat 288.118 kb on - strandat 288.118 kb on - strandat 288.305 kb on - strand, within H281DRAFT_04846at 288.324 kb on + strand, within H281DRAFT_04846at 288.420 kb on - strand, within H281DRAFT_04846at 288.423 kb on + strand, within H281DRAFT_04846at 288.468 kb on - strand, within H281DRAFT_04846at 288.518 kb on + strand, within H281DRAFT_04846at 288.578 kb on + strandat 288.578 kb on + strandat 288.579 kb on - strandat 288.579 kb on - strandat 288.579 kb on - strandat 288.579 kb on - strandat 288.603 kb on + strandat 288.664 kb on - strandat 288.664 kb on - strandat 288.668 kb on + strandat 288.668 kb on + strandat 288.668 kb on + strandat 288.669 kb on - strandat 288.669 kb on - strandat 288.669 kb on - strandat 288.669 kb on - strandat 288.669 kb on - strandat 288.779 kb on + strandat 288.779 kb on + strandat 288.779 kb on + strandat 288.780 kb on - strandat 288.780 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pimelic (C)
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285,741 - H281DRAFT_04844 0.53 -2.1
285,795 - H281DRAFT_04844 0.56 -1.8
285,863 + -0.7
285,864 - H281DRAFT_04844 0.59 +1.7
285,887 - H281DRAFT_04844 0.61 +1.1
285,887 - H281DRAFT_04844 0.61 -0.7
285,959 + H281DRAFT_04844 0.64 -1.9
285,992 + H281DRAFT_04844 0.66 -2.0
286,089 - H281DRAFT_04844 0.71 -1.5
286,183 - H281DRAFT_04844 0.76 -1.5
286,183 - H281DRAFT_04844 0.76 -0.6
286,215 + H281DRAFT_04844 0.78 -1.1
286,215 + H281DRAFT_04844 0.78 -2.9
286,236 - +2.2
286,307 + H281DRAFT_04844 0.83 +0.1
286,348 + H281DRAFT_04844 0.85 -1.3
286,364 + H281DRAFT_04844 0.86 -0.5
286,364 + H281DRAFT_04844 0.86 -2.1
286,365 - H281DRAFT_04844 0.86 -0.7
286,379 - H281DRAFT_04844 0.86 +1.1
286,399 - H281DRAFT_04844 0.88 -1.7
286,399 - H281DRAFT_04844 0.88 -3.1
286,417 + H281DRAFT_04844 0.88 -2.5
286,457 + -1.7
286,457 + -0.7
286,625 + +0.8
286,626 - +0.9
286,667 + +0.2
286,668 - -0.9
286,668 - -1.0
286,668 - -0.2
286,693 - -1.5
286,725 + -0.3
286,825 + H281DRAFT_04845 0.12 +0.8
286,845 + H281DRAFT_04845 0.14 -1.0
286,913 - H281DRAFT_04845 0.20 -0.5
286,913 - H281DRAFT_04845 0.20 +0.4
286,966 + H281DRAFT_04845 0.24 -0.3
286,967 - H281DRAFT_04845 0.24 -0.2
286,967 - H281DRAFT_04845 0.24 +0.2
287,055 - H281DRAFT_04845 0.32 -0.1
287,109 + H281DRAFT_04845 0.37 -1.2
287,110 - H281DRAFT_04845 0.37 -0.4
287,393 - H281DRAFT_04845 0.62 +0.0
287,413 - H281DRAFT_04845 0.64 -0.5
287,457 + H281DRAFT_04845 0.68 -0.2
287,458 - H281DRAFT_04845 0.68 -0.2
287,585 - H281DRAFT_04845 0.79 -0.6
287,585 - H281DRAFT_04845 0.79 +0.4
287,585 - H281DRAFT_04845 0.79 -0.1
287,585 - H281DRAFT_04845 0.79 +0.2
287,585 - H281DRAFT_04845 0.79 +0.1
287,631 + H281DRAFT_04845 0.83 +0.3
287,632 - H281DRAFT_04845 0.83 -0.5
287,647 + H281DRAFT_04845 0.85 +0.7
287,647 + H281DRAFT_04845 0.85 -2.2
287,647 + H281DRAFT_04845 0.85 -0.3
287,648 - H281DRAFT_04845 0.85 +1.1
287,648 - H281DRAFT_04845 0.85 +0.3
287,648 - H281DRAFT_04845 0.85 -0.2
287,658 - H281DRAFT_04845 0.85 -0.5
287,737 + +0.2
287,756 - +1.4
287,756 - -0.9
287,889 + -0.3
287,889 + -1.1
287,913 + -1.3
287,929 + -2.2
287,929 + +0.6
287,929 + -2.1
287,930 - +0.8
288,027 + +0.4
288,027 + +1.5
288,028 - +0.4
288,028 - +0.1
288,117 + +0.4
288,118 - -0.7
288,118 - +0.1
288,305 - H281DRAFT_04846 0.40 +0.0
288,324 + H281DRAFT_04846 0.44 -1.2
288,420 - H281DRAFT_04846 0.65 -0.7
288,423 + H281DRAFT_04846 0.66 -0.6
288,468 - H281DRAFT_04846 0.76 -0.5
288,518 + H281DRAFT_04846 0.87 +0.3
288,578 + +0.4
288,578 + -0.1
288,579 - -0.5
288,579 - +0.2
288,579 - -0.3
288,579 - +0.7
288,603 + +2.2
288,664 - +0.4
288,664 - +0.5
288,668 + -0.2
288,668 + -0.4
288,668 + +0.2
288,669 - -0.7
288,669 - -1.3
288,669 - +0.2
288,669 - -0.1
288,669 - -1.4
288,779 + +0.5
288,779 + +0.3
288,779 + -0.0
288,780 - -0.6
288,780 - -0.5

Or see this region's nucleotide sequence