Experiment: Pimelic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04842 and H281DRAFT_04843 are separated by 230 nucleotides H281DRAFT_04843 and H281DRAFT_04844 overlap by 4 nucleotides
H281DRAFT_04842: H281DRAFT_04842 - hypothetical protein, at 280,953 to 283,577
_04842
H281DRAFT_04843: H281DRAFT_04843 - UDP-glucose 4-epimerase, at 283,808 to 284,740
_04843
H281DRAFT_04844: H281DRAFT_04844 - Glycosyltransferase, GT2 family, at 284,737 to 286,635
_04844
Position (kb) 283
284
285 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 282.945 kb on + strand, within H281DRAFT_04842 at 282.945 kb on + strand, within H281DRAFT_04842 at 282.946 kb on - strand, within H281DRAFT_04842 at 283.235 kb on + strand, within H281DRAFT_04842 at 283.236 kb on - strand, within H281DRAFT_04842 at 283.354 kb on + strand at 283.354 kb on + strand at 283.444 kb on + strand at 283.520 kb on - strand at 283.531 kb on - strand at 283.531 kb on - strand at 283.531 kb on - strand at 283.570 kb on - strand at 283.570 kb on - strand at 283.601 kb on + strand at 283.601 kb on + strand at 283.601 kb on + strand at 283.602 kb on - strand at 283.611 kb on - strand at 283.710 kb on - strand at 283.710 kb on - strand at 283.756 kb on - strand at 284.751 kb on + strand at 284.846 kb on + strand at 284.889 kb on + strand at 284.889 kb on + strand at 284.889 kb on + strand at 284.890 kb on - strand at 284.891 kb on + strand at 284.891 kb on + strand at 284.892 kb on - strand at 284.967 kb on - strand, within H281DRAFT_04844 at 284.967 kb on - strand, within H281DRAFT_04844 at 284.987 kb on + strand, within H281DRAFT_04844 at 284.994 kb on + strand, within H281DRAFT_04844 at 284.994 kb on + strand, within H281DRAFT_04844 at 284.995 kb on - strand, within H281DRAFT_04844 at 285.086 kb on + strand, within H281DRAFT_04844 at 285.087 kb on - strand, within H281DRAFT_04844 at 285.259 kb on + strand, within H281DRAFT_04844 at 285.260 kb on - strand, within H281DRAFT_04844 at 285.346 kb on - strand, within H281DRAFT_04844 at 285.413 kb on + strand, within H281DRAFT_04844 at 285.414 kb on - strand, within H281DRAFT_04844 at 285.477 kb on - strand, within H281DRAFT_04844 at 285.536 kb on + strand, within H281DRAFT_04844 at 285.536 kb on + strand, within H281DRAFT_04844 at 285.537 kb on - strand, within H281DRAFT_04844 at 285.537 kb on - strand, within H281DRAFT_04844 at 285.537 kb on - strand, within H281DRAFT_04844 at 285.537 kb on - strand, within H281DRAFT_04844 at 285.537 kb on - strand, within H281DRAFT_04844 at 285.540 kb on + strand, within H281DRAFT_04844 at 285.540 kb on + strand, within H281DRAFT_04844 at 285.541 kb on - strand, within H281DRAFT_04844 at 285.541 kb on - strand, within H281DRAFT_04844 at 285.654 kb on - strand, within H281DRAFT_04844
Per-strain Table
Position Strand Gene LocusTag Fraction Pimelic (C) remove 282,945 + H281DRAFT_04842 0.76 +0.9 282,945 + H281DRAFT_04842 0.76 -0.2 282,946 - H281DRAFT_04842 0.76 +1.4 283,235 + H281DRAFT_04842 0.87 +0.2 283,236 - H281DRAFT_04842 0.87 +1.0 283,354 + +0.6 283,354 + +0.0 283,444 + -0.1 283,520 - +0.4 283,531 - +0.4 283,531 - -0.3 283,531 - -0.2 283,570 - +0.3 283,570 - -0.3 283,601 + +0.2 283,601 + +0.8 283,601 + -0.7 283,602 - +0.2 283,611 - -0.4 283,710 - +0.7 283,710 - +0.1 283,756 - -0.6 284,751 + -2.0 284,846 + -1.1 284,889 + +0.7 284,889 + +0.2 284,889 + -1.9 284,890 - +1.7 284,891 + +2.7 284,891 + -3.3 284,892 - +0.6 284,967 - H281DRAFT_04844 0.12 -1.0 284,967 - H281DRAFT_04844 0.12 -0.7 284,987 + H281DRAFT_04844 0.13 -1.7 284,994 + H281DRAFT_04844 0.14 -2.5 284,994 + H281DRAFT_04844 0.14 -1.1 284,995 - H281DRAFT_04844 0.14 -0.3 285,086 + H281DRAFT_04844 0.18 +1.7 285,087 - H281DRAFT_04844 0.18 -2.2 285,259 + H281DRAFT_04844 0.27 -1.4 285,260 - H281DRAFT_04844 0.28 -0.9 285,346 - H281DRAFT_04844 0.32 -0.5 285,413 + H281DRAFT_04844 0.36 -2.3 285,414 - H281DRAFT_04844 0.36 -0.3 285,477 - H281DRAFT_04844 0.39 +0.1 285,536 + H281DRAFT_04844 0.42 -0.3 285,536 + H281DRAFT_04844 0.42 -1.2 285,537 - H281DRAFT_04844 0.42 +0.9 285,537 - H281DRAFT_04844 0.42 +0.9 285,537 - H281DRAFT_04844 0.42 +1.7 285,537 - H281DRAFT_04844 0.42 -2.1 285,537 - H281DRAFT_04844 0.42 +0.9 285,540 + H281DRAFT_04844 0.42 -1.3 285,540 + H281DRAFT_04844 0.42 -2.9 285,541 - H281DRAFT_04844 0.42 -1.9 285,541 - H281DRAFT_04844 0.42 -2.5 285,654 - H281DRAFT_04844 0.48 -1.5
Or see this region's nucleotide sequence