Experiment: Pimelic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04744 and H281DRAFT_04745 are separated by 237 nucleotides H281DRAFT_04745 and H281DRAFT_04746 overlap by 4 nucleotides H281DRAFT_04746 and H281DRAFT_04747 are separated by 519 nucleotides
H281DRAFT_04744: H281DRAFT_04744 - enoyl-CoA hydratase, at 153,550 to 154,374
_04744
H281DRAFT_04745: H281DRAFT_04745 - hypothetical protein, at 154,612 to 155,085
_04745
H281DRAFT_04746: H281DRAFT_04746 - D-lactate dehydrogenase, at 155,082 to 156,107
_04746
H281DRAFT_04747: H281DRAFT_04747 - aspartate-alanine antiporter, at 156,627 to 158,309
_04747
Position (kb) 155
156
157 Strain fitness (log2 ratio) -2
-1
0
1
2 at 154.337 kb on - strand at 154.346 kb on + strand at 154.347 kb on - strand at 154.347 kb on - strand at 154.347 kb on - strand at 154.454 kb on + strand at 154.458 kb on - strand at 154.495 kb on - strand at 154.636 kb on + strand at 154.637 kb on - strand at 154.637 kb on - strand at 154.637 kb on - strand at 154.748 kb on - strand, within H281DRAFT_04745 at 154.748 kb on - strand, within H281DRAFT_04745 at 154.748 kb on - strand, within H281DRAFT_04745 at 154.761 kb on + strand, within H281DRAFT_04745 at 154.828 kb on - strand, within H281DRAFT_04745 at 154.844 kb on - strand, within H281DRAFT_04745 at 154.877 kb on + strand, within H281DRAFT_04745 at 154.945 kb on + strand at 155.084 kb on - strand at 155.327 kb on - strand, within H281DRAFT_04746 at 155.470 kb on + strand, within H281DRAFT_04746 at 155.542 kb on + strand, within H281DRAFT_04746 at 155.543 kb on - strand, within H281DRAFT_04746 at 155.683 kb on - strand at 155.915 kb on - strand, within H281DRAFT_04746 at 155.915 kb on - strand, within H281DRAFT_04746 at 156.034 kb on + strand at 156.035 kb on - strand at 156.077 kb on - strand at 156.077 kb on - strand at 156.189 kb on + strand at 156.190 kb on - strand at 156.192 kb on - strand at 156.316 kb on + strand at 156.452 kb on + strand at 156.452 kb on + strand at 156.580 kb on + strand at 156.584 kb on + strand at 156.763 kb on + strand at 156.763 kb on + strand at 157.102 kb on - strand, within H281DRAFT_04747 at 157.102 kb on - strand, within H281DRAFT_04747
Per-strain Table
Position Strand Gene LocusTag Fraction Pimelic (C) remove 154,337 - -0.1 154,346 + +0.6 154,347 - -0.1 154,347 - +0.6 154,347 - +0.7 154,454 + +0.3 154,458 - +1.0 154,495 - +0.5 154,636 + +0.2 154,637 - +0.6 154,637 - +0.2 154,637 - -0.0 154,748 - H281DRAFT_04745 0.29 +0.4 154,748 - H281DRAFT_04745 0.29 +0.5 154,748 - H281DRAFT_04745 0.29 -0.5 154,761 + H281DRAFT_04745 0.31 -0.4 154,828 - H281DRAFT_04745 0.46 -0.6 154,844 - H281DRAFT_04745 0.49 +0.1 154,877 + H281DRAFT_04745 0.56 -1.4 154,945 + -0.9 155,084 - -0.4 155,327 - H281DRAFT_04746 0.24 +0.7 155,470 + H281DRAFT_04746 0.38 +0.0 155,542 + H281DRAFT_04746 0.45 +0.1 155,543 - H281DRAFT_04746 0.45 +1.4 155,683 - -1.8 155,915 - H281DRAFT_04746 0.81 +0.1 155,915 - H281DRAFT_04746 0.81 +2.7 156,034 + -0.0 156,035 - +0.2 156,077 - -1.5 156,077 - +0.2 156,189 + +0.8 156,190 - +0.4 156,192 - -0.2 156,316 + -0.4 156,452 + -0.0 156,452 + +0.1 156,580 + +0.5 156,584 + +0.6 156,763 + +0.7 156,763 + -0.4 157,102 - H281DRAFT_04747 0.28 -0.1 157,102 - H281DRAFT_04747 0.28 -0.2
Or see this region's nucleotide sequence