Experiment: Pimelic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04675 and H281DRAFT_04676 are separated by 77 nucleotides H281DRAFT_04676 and H281DRAFT_04677 are separated by 274 nucleotides
H281DRAFT_04675: H281DRAFT_04675 - catalase, at 78,967 to 80,421
_04675
H281DRAFT_04676: H281DRAFT_04676 - hypothetical protein, at 80,499 to 80,660
_04676
H281DRAFT_04677: H281DRAFT_04677 - starvation-inducible DNA-binding protein, at 80,935 to 81,423
_04677
Position (kb) 80
81 Strain fitness (log2 ratio) -1
0
1
2 at 79.562 kb on - strand, within H281DRAFT_04675 at 79.778 kb on - strand, within H281DRAFT_04675 at 79.876 kb on + strand, within H281DRAFT_04675 at 79.876 kb on + strand, within H281DRAFT_04675 at 79.877 kb on - strand, within H281DRAFT_04675 at 80.082 kb on + strand, within H281DRAFT_04675 at 80.114 kb on - strand, within H281DRAFT_04675 at 80.218 kb on + strand, within H281DRAFT_04675 at 80.219 kb on - strand, within H281DRAFT_04675 at 80.221 kb on + strand, within H281DRAFT_04675 at 80.221 kb on + strand, within H281DRAFT_04675 at 80.222 kb on - strand, within H281DRAFT_04675 at 80.366 kb on - strand at 80.419 kb on + strand at 80.562 kb on + strand, within H281DRAFT_04676 at 80.563 kb on - strand, within H281DRAFT_04676 at 80.563 kb on - strand, within H281DRAFT_04676 at 80.784 kb on + strand at 80.836 kb on + strand at 80.837 kb on - strand at 80.837 kb on - strand at 80.895 kb on - strand at 80.912 kb on + strand at 80.913 kb on - strand at 80.913 kb on - strand at 80.955 kb on - strand at 80.955 kb on - strand at 80.968 kb on - strand at 81.034 kb on + strand, within H281DRAFT_04677 at 81.034 kb on + strand, within H281DRAFT_04677 at 81.034 kb on + strand, within H281DRAFT_04677 at 81.034 kb on + strand, within H281DRAFT_04677 at 81.034 kb on + strand, within H281DRAFT_04677 at 81.035 kb on - strand, within H281DRAFT_04677 at 81.035 kb on - strand, within H281DRAFT_04677 at 81.035 kb on - strand, within H281DRAFT_04677 at 81.036 kb on + strand, within H281DRAFT_04677 at 81.036 kb on + strand, within H281DRAFT_04677 at 81.036 kb on + strand, within H281DRAFT_04677 at 81.036 kb on + strand, within H281DRAFT_04677 at 81.037 kb on - strand, within H281DRAFT_04677 at 81.122 kb on - strand, within H281DRAFT_04677 at 81.196 kb on + strand, within H281DRAFT_04677 at 81.197 kb on - strand, within H281DRAFT_04677 at 81.197 kb on - strand, within H281DRAFT_04677 at 81.197 kb on - strand, within H281DRAFT_04677 at 81.197 kb on - strand, within H281DRAFT_04677 at 81.197 kb on - strand, within H281DRAFT_04677 at 81.301 kb on - strand, within H281DRAFT_04677
Per-strain Table
Position Strand Gene LocusTag Fraction Pimelic (C) remove 79,562 - H281DRAFT_04675 0.41 -1.1 79,778 - H281DRAFT_04675 0.56 +0.2 79,876 + H281DRAFT_04675 0.62 -0.3 79,876 + H281DRAFT_04675 0.62 +0.5 79,877 - H281DRAFT_04675 0.63 -0.6 80,082 + H281DRAFT_04675 0.77 -0.2 80,114 - H281DRAFT_04675 0.79 +0.3 80,218 + H281DRAFT_04675 0.86 +0.4 80,219 - H281DRAFT_04675 0.86 -0.6 80,221 + H281DRAFT_04675 0.86 +0.3 80,221 + H281DRAFT_04675 0.86 +0.1 80,222 - H281DRAFT_04675 0.86 -0.4 80,366 - -0.2 80,419 + -1.1 80,562 + H281DRAFT_04676 0.39 +1.1 80,563 - H281DRAFT_04676 0.40 +0.5 80,563 - H281DRAFT_04676 0.40 -0.1 80,784 + -0.1 80,836 + +0.5 80,837 - +0.7 80,837 - -0.2 80,895 - -0.9 80,912 + +0.2 80,913 - -0.5 80,913 - +0.4 80,955 - -0.2 80,955 - -0.9 80,968 - +0.5 81,034 + H281DRAFT_04677 0.20 +0.1 81,034 + H281DRAFT_04677 0.20 +0.2 81,034 + H281DRAFT_04677 0.20 +0.6 81,034 + H281DRAFT_04677 0.20 -0.7 81,034 + H281DRAFT_04677 0.20 -0.1 81,035 - H281DRAFT_04677 0.20 -0.4 81,035 - H281DRAFT_04677 0.20 +0.0 81,035 - H281DRAFT_04677 0.20 -0.4 81,036 + H281DRAFT_04677 0.21 +0.0 81,036 + H281DRAFT_04677 0.21 -0.8 81,036 + H281DRAFT_04677 0.21 -0.0 81,036 + H281DRAFT_04677 0.21 -0.1 81,037 - H281DRAFT_04677 0.21 -0.3 81,122 - H281DRAFT_04677 0.38 +0.1 81,196 + H281DRAFT_04677 0.53 +1.8 81,197 - H281DRAFT_04677 0.54 -0.8 81,197 - H281DRAFT_04677 0.54 +0.3 81,197 - H281DRAFT_04677 0.54 +0.1 81,197 - H281DRAFT_04677 0.54 -0.5 81,197 - H281DRAFT_04677 0.54 +1.1 81,301 - H281DRAFT_04677 0.75 -0.9
Or see this region's nucleotide sequence