Experiment: Pimelic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04138 and H281DRAFT_04139 overlap by 14 nucleotides H281DRAFT_04139 and H281DRAFT_04140 are separated by 231 nucleotides H281DRAFT_04140 and H281DRAFT_04141 are separated by 41 nucleotides
H281DRAFT_04138: H281DRAFT_04138 - Uncharacterized conserved protein YecE, DUF72 family, at 248,539 to 249,945
_04138
H281DRAFT_04139: H281DRAFT_04139 - peptide-methionine (S)-S-oxide reductase, at 249,932 to 250,480
_04139
H281DRAFT_04140: H281DRAFT_04140 - NADH-FMN oxidoreductase RutF, flavin reductase (DIM6/NTAB) family, at 250,712 to 251,245
_04140
H281DRAFT_04141: H281DRAFT_04141 - transcriptional regulator, AsnC family, at 251,287 to 251,802
_04141
Position (kb) 249
250
251 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 249.073 kb on + strand, within H281DRAFT_04138 at 249.073 kb on + strand, within H281DRAFT_04138 at 249.073 kb on + strand, within H281DRAFT_04138 at 249.074 kb on - strand, within H281DRAFT_04138 at 249.161 kb on - strand, within H281DRAFT_04138 at 249.225 kb on + strand, within H281DRAFT_04138 at 249.437 kb on + strand, within H281DRAFT_04138 at 249.437 kb on + strand, within H281DRAFT_04138 at 249.437 kb on + strand, within H281DRAFT_04138 at 249.438 kb on - strand, within H281DRAFT_04138 at 249.493 kb on + strand, within H281DRAFT_04138 at 249.494 kb on - strand, within H281DRAFT_04138 at 249.569 kb on - strand, within H281DRAFT_04138 at 249.785 kb on - strand, within H281DRAFT_04138 at 250.032 kb on + strand, within H281DRAFT_04139 at 250.044 kb on + strand, within H281DRAFT_04139 at 250.044 kb on + strand, within H281DRAFT_04139 at 250.045 kb on - strand, within H281DRAFT_04139 at 250.045 kb on - strand, within H281DRAFT_04139 at 250.082 kb on + strand, within H281DRAFT_04139 at 250.082 kb on + strand at 250.083 kb on - strand, within H281DRAFT_04139 at 250.107 kb on + strand, within H281DRAFT_04139 at 250.107 kb on + strand, within H281DRAFT_04139 at 250.108 kb on - strand, within H281DRAFT_04139 at 250.108 kb on - strand, within H281DRAFT_04139 at 250.108 kb on - strand, within H281DRAFT_04139 at 250.256 kb on - strand, within H281DRAFT_04139 at 250.347 kb on + strand, within H281DRAFT_04139 at 250.347 kb on + strand, within H281DRAFT_04139 at 250.348 kb on - strand, within H281DRAFT_04139 at 250.348 kb on - strand, within H281DRAFT_04139 at 250.378 kb on - strand, within H281DRAFT_04139 at 250.416 kb on + strand, within H281DRAFT_04139 at 250.416 kb on + strand, within H281DRAFT_04139 at 250.417 kb on - strand, within H281DRAFT_04139 at 250.513 kb on - strand at 250.534 kb on - strand at 250.540 kb on + strand at 250.541 kb on - strand at 250.663 kb on + strand at 250.664 kb on - strand at 250.871 kb on - strand, within H281DRAFT_04140 at 250.871 kb on - strand, within H281DRAFT_04140 at 250.959 kb on - strand, within H281DRAFT_04140 at 250.995 kb on + strand, within H281DRAFT_04140 at 250.995 kb on + strand, within H281DRAFT_04140 at 250.995 kb on + strand, within H281DRAFT_04140 at 250.996 kb on - strand, within H281DRAFT_04140 at 250.996 kb on - strand, within H281DRAFT_04140 at 250.996 kb on - strand, within H281DRAFT_04140 at 250.996 kb on - strand, within H281DRAFT_04140 at 251.040 kb on + strand, within H281DRAFT_04140 at 251.041 kb on - strand, within H281DRAFT_04140 at 251.088 kb on + strand, within H281DRAFT_04140 at 251.244 kb on - strand at 251.413 kb on - strand, within H281DRAFT_04141 at 251.413 kb on - strand, within H281DRAFT_04141 at 251.413 kb on - strand, within H281DRAFT_04141 at 251.414 kb on + strand, within H281DRAFT_04141 at 251.414 kb on + strand, within H281DRAFT_04141 at 251.414 kb on + strand at 251.414 kb on + strand, within H281DRAFT_04141 at 251.414 kb on + strand, within H281DRAFT_04141 at 251.414 kb on + strand, within H281DRAFT_04141 at 251.414 kb on + strand at 251.477 kb on + strand, within H281DRAFT_04141 at 251.478 kb on - strand, within H281DRAFT_04141 at 251.478 kb on - strand, within H281DRAFT_04141
Per-strain Table
Position Strand Gene LocusTag Fraction Pimelic (C) remove 249,073 + H281DRAFT_04138 0.38 +0.1 249,073 + H281DRAFT_04138 0.38 +0.4 249,073 + H281DRAFT_04138 0.38 -0.4 249,074 - H281DRAFT_04138 0.38 +0.4 249,161 - H281DRAFT_04138 0.44 -0.1 249,225 + H281DRAFT_04138 0.49 -0.1 249,437 + H281DRAFT_04138 0.64 -0.1 249,437 + H281DRAFT_04138 0.64 -0.4 249,437 + H281DRAFT_04138 0.64 +0.6 249,438 - H281DRAFT_04138 0.64 -0.2 249,493 + H281DRAFT_04138 0.68 +0.1 249,494 - H281DRAFT_04138 0.68 +0.3 249,569 - H281DRAFT_04138 0.73 +1.2 249,785 - H281DRAFT_04138 0.89 +0.3 250,032 + H281DRAFT_04139 0.18 +1.0 250,044 + H281DRAFT_04139 0.20 -0.6 250,044 + H281DRAFT_04139 0.20 +0.3 250,045 - H281DRAFT_04139 0.21 +0.5 250,045 - H281DRAFT_04139 0.21 +0.1 250,082 + H281DRAFT_04139 0.27 -0.3 250,082 + -0.1 250,083 - H281DRAFT_04139 0.28 -0.2 250,107 + H281DRAFT_04139 0.32 -0.8 250,107 + H281DRAFT_04139 0.32 +0.2 250,108 - H281DRAFT_04139 0.32 +0.3 250,108 - H281DRAFT_04139 0.32 -1.1 250,108 - H281DRAFT_04139 0.32 +0.5 250,256 - H281DRAFT_04139 0.59 -0.4 250,347 + H281DRAFT_04139 0.76 +0.2 250,347 + H281DRAFT_04139 0.76 +0.2 250,348 - H281DRAFT_04139 0.76 -0.4 250,348 - H281DRAFT_04139 0.76 -1.0 250,378 - H281DRAFT_04139 0.81 -0.0 250,416 + H281DRAFT_04139 0.88 -0.3 250,416 + H281DRAFT_04139 0.88 +0.1 250,417 - H281DRAFT_04139 0.88 +2.2 250,513 - -0.2 250,534 - +0.3 250,540 + -0.3 250,541 - +0.6 250,663 + -0.1 250,664 - +0.6 250,871 - H281DRAFT_04140 0.30 +0.7 250,871 - H281DRAFT_04140 0.30 +2.7 250,959 - H281DRAFT_04140 0.46 +0.5 250,995 + H281DRAFT_04140 0.53 -1.6 250,995 + H281DRAFT_04140 0.53 -0.3 250,995 + H281DRAFT_04140 0.53 +0.3 250,996 - H281DRAFT_04140 0.53 -0.3 250,996 - H281DRAFT_04140 0.53 -0.4 250,996 - H281DRAFT_04140 0.53 -1.1 250,996 - H281DRAFT_04140 0.53 +0.2 251,040 + H281DRAFT_04140 0.61 +1.0 251,041 - H281DRAFT_04140 0.62 -0.5 251,088 + H281DRAFT_04140 0.70 +1.7 251,244 - -0.8 251,413 - H281DRAFT_04141 0.24 -0.3 251,413 - H281DRAFT_04141 0.24 -0.8 251,413 - H281DRAFT_04141 0.24 +0.4 251,414 + H281DRAFT_04141 0.25 +0.1 251,414 + H281DRAFT_04141 0.25 -0.6 251,414 + +4.1 251,414 + H281DRAFT_04141 0.25 -0.2 251,414 + H281DRAFT_04141 0.25 +0.6 251,414 + H281DRAFT_04141 0.25 +0.2 251,414 + -0.8 251,477 + H281DRAFT_04141 0.37 +0.6 251,478 - H281DRAFT_04141 0.37 -0.6 251,478 - H281DRAFT_04141 0.37 +0.0
Or see this region's nucleotide sequence