Experiment: Pimelic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04057 and H281DRAFT_04058 are separated by 15 nucleotides H281DRAFT_04058 and H281DRAFT_04059 are separated by 120 nucleotides H281DRAFT_04059 and H281DRAFT_04060 overlap by 1 nucleotides
H281DRAFT_04057: H281DRAFT_04057 - acetylornithine aminotransferase apoenzyme, at 158,681 to 159,865
_04057
H281DRAFT_04058: H281DRAFT_04058 - Acetyltransferase, GNAT family, at 159,881 to 160,354
_04058
H281DRAFT_04059: H281DRAFT_04059 - amino acid/amide ABC transporter ATP-binding protein 2, HAAT family, at 160,475 to 161,197
_04059
H281DRAFT_04060: H281DRAFT_04060 - amino acid/amide ABC transporter ATP-binding protein 1, HAAT family, at 161,197 to 161,970
_04060
Position (kb) 159
160
161 Strain fitness (log2 ratio) -2
-1
0
1
2 at 158.907 kb on - strand, within H281DRAFT_04057 at 158.950 kb on + strand, within H281DRAFT_04057 at 158.950 kb on + strand, within H281DRAFT_04057 at 158.950 kb on + strand, within H281DRAFT_04057 at 158.950 kb on + strand, within H281DRAFT_04057 at 158.951 kb on - strand, within H281DRAFT_04057 at 158.951 kb on - strand, within H281DRAFT_04057 at 159.140 kb on + strand, within H281DRAFT_04057 at 159.141 kb on - strand, within H281DRAFT_04057 at 159.141 kb on - strand, within H281DRAFT_04057 at 159.428 kb on - strand, within H281DRAFT_04057 at 159.509 kb on + strand, within H281DRAFT_04057 at 159.509 kb on + strand, within H281DRAFT_04057 at 159.510 kb on - strand, within H281DRAFT_04057 at 159.510 kb on - strand, within H281DRAFT_04057 at 159.605 kb on + strand, within H281DRAFT_04057 at 159.863 kb on + strand at 159.863 kb on + strand at 159.863 kb on + strand at 159.864 kb on - strand at 159.864 kb on - strand at 159.864 kb on - strand at 159.911 kb on - strand at 160.059 kb on + strand, within H281DRAFT_04058 at 160.128 kb on - strand, within H281DRAFT_04058 at 160.476 kb on + strand at 160.476 kb on + strand at 160.488 kb on + strand at 160.488 kb on + strand at 160.488 kb on + strand at 160.566 kb on + strand, within H281DRAFT_04059 at 160.567 kb on - strand, within H281DRAFT_04059 at 160.567 kb on - strand, within H281DRAFT_04059 at 160.831 kb on + strand, within H281DRAFT_04059 at 160.831 kb on + strand, within H281DRAFT_04059 at 160.832 kb on - strand, within H281DRAFT_04059 at 160.832 kb on - strand, within H281DRAFT_04059 at 160.832 kb on - strand, within H281DRAFT_04059 at 160.832 kb on - strand, within H281DRAFT_04059 at 160.832 kb on - strand, within H281DRAFT_04059 at 160.832 kb on - strand, within H281DRAFT_04059 at 161.001 kb on + strand, within H281DRAFT_04059 at 161.001 kb on + strand, within H281DRAFT_04059 at 161.001 kb on + strand, within H281DRAFT_04059 at 161.002 kb on - strand, within H281DRAFT_04059 at 161.023 kb on - strand, within H281DRAFT_04059 at 161.149 kb on - strand at 161.219 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pimelic (C) remove 158,907 - H281DRAFT_04057 0.19 +0.2 158,950 + H281DRAFT_04057 0.23 +0.1 158,950 + H281DRAFT_04057 0.23 -0.1 158,950 + H281DRAFT_04057 0.23 -0.1 158,950 + H281DRAFT_04057 0.23 +0.4 158,951 - H281DRAFT_04057 0.23 -0.3 158,951 - H281DRAFT_04057 0.23 -0.5 159,140 + H281DRAFT_04057 0.39 -0.1 159,141 - H281DRAFT_04057 0.39 -0.4 159,141 - H281DRAFT_04057 0.39 +0.3 159,428 - H281DRAFT_04057 0.63 +0.1 159,509 + H281DRAFT_04057 0.70 -0.4 159,509 + H281DRAFT_04057 0.70 +0.4 159,510 - H281DRAFT_04057 0.70 -0.3 159,510 - H281DRAFT_04057 0.70 +0.1 159,605 + H281DRAFT_04057 0.78 -0.1 159,863 + +0.6 159,863 + -1.1 159,863 + -0.7 159,864 - +0.7 159,864 - -0.1 159,864 - +0.6 159,911 - +0.8 160,059 + H281DRAFT_04058 0.38 +0.0 160,128 - H281DRAFT_04058 0.52 +2.0 160,476 + -2.0 160,476 + -0.4 160,488 + -0.5 160,488 + +0.6 160,488 + +0.4 160,566 + H281DRAFT_04059 0.13 -0.4 160,567 - H281DRAFT_04059 0.13 -0.4 160,567 - H281DRAFT_04059 0.13 -0.0 160,831 + H281DRAFT_04059 0.49 +0.0 160,831 + H281DRAFT_04059 0.49 -0.1 160,832 - H281DRAFT_04059 0.49 +0.6 160,832 - H281DRAFT_04059 0.49 +0.5 160,832 - H281DRAFT_04059 0.49 -0.3 160,832 - H281DRAFT_04059 0.49 -0.7 160,832 - H281DRAFT_04059 0.49 +0.1 160,832 - H281DRAFT_04059 0.49 -0.2 161,001 + H281DRAFT_04059 0.73 -0.1 161,001 + H281DRAFT_04059 0.73 +0.1 161,001 + H281DRAFT_04059 0.73 +0.1 161,002 - H281DRAFT_04059 0.73 +0.6 161,023 - H281DRAFT_04059 0.76 -0.4 161,149 - -0.3 161,219 + +0.5
Or see this region's nucleotide sequence