Experiment: Pimelic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03817 and H281DRAFT_03818 are separated by 394 nucleotides H281DRAFT_03818 and H281DRAFT_03819 are separated by 51 nucleotides
H281DRAFT_03817: H281DRAFT_03817 - drug resistance transporter, EmrB/QacA subfamily, at 340,391 to 341,899
_03817
H281DRAFT_03818: H281DRAFT_03818 - methyl-accepting chemotaxis sensory transducer with Cache sensor, at 342,294 to 343,916
_03818
H281DRAFT_03819: H281DRAFT_03819 - hypothetical protein, at 343,968 to 345,551
_03819
Position (kb) 342
343
344 Strain fitness (log2 ratio) -1
0
1
2
3 at 341.398 kb on - strand, within H281DRAFT_03817 at 341.725 kb on - strand, within H281DRAFT_03817 at 341.796 kb on + strand at 341.797 kb on - strand at 341.797 kb on - strand at 341.799 kb on + strand at 341.976 kb on + strand at 341.989 kb on + strand at 341.989 kb on + strand at 341.989 kb on + strand at 342.018 kb on - strand at 342.037 kb on + strand at 342.045 kb on + strand at 342.045 kb on + strand at 342.048 kb on - strand at 342.072 kb on - strand at 342.194 kb on + strand at 342.195 kb on - strand at 342.195 kb on - strand at 342.562 kb on - strand, within H281DRAFT_03818 at 342.670 kb on - strand, within H281DRAFT_03818 at 342.721 kb on - strand, within H281DRAFT_03818 at 342.822 kb on + strand, within H281DRAFT_03818 at 342.822 kb on + strand, within H281DRAFT_03818 at 342.861 kb on + strand, within H281DRAFT_03818 at 342.861 kb on + strand, within H281DRAFT_03818 at 342.880 kb on + strand, within H281DRAFT_03818 at 342.964 kb on - strand, within H281DRAFT_03818 at 343.172 kb on + strand, within H281DRAFT_03818 at 343.940 kb on - strand at 344.142 kb on - strand, within H281DRAFT_03819 at 344.325 kb on + strand, within H281DRAFT_03819 at 344.325 kb on + strand, within H281DRAFT_03819 at 344.325 kb on + strand, within H281DRAFT_03819 at 344.446 kb on - strand, within H281DRAFT_03819 at 344.466 kb on + strand, within H281DRAFT_03819 at 344.467 kb on - strand, within H281DRAFT_03819 at 344.467 kb on - strand, within H281DRAFT_03819 at 344.467 kb on - strand, within H281DRAFT_03819 at 344.467 kb on - strand, within H281DRAFT_03819 at 344.467 kb on - strand, within H281DRAFT_03819 at 344.505 kb on + strand, within H281DRAFT_03819 at 344.534 kb on + strand, within H281DRAFT_03819 at 344.820 kb on + strand, within H281DRAFT_03819 at 344.820 kb on + strand, within H281DRAFT_03819 at 344.820 kb on + strand, within H281DRAFT_03819 at 344.820 kb on + strand at 344.820 kb on + strand, within H281DRAFT_03819 at 344.820 kb on + strand, within H281DRAFT_03819 at 344.822 kb on + strand, within H281DRAFT_03819 at 344.823 kb on - strand, within H281DRAFT_03819 at 344.833 kb on - strand, within H281DRAFT_03819
Per-strain Table
Position Strand Gene LocusTag Fraction Pimelic (C) remove 341,398 - H281DRAFT_03817 0.67 -0.8 341,725 - H281DRAFT_03817 0.88 +0.4 341,796 + -0.3 341,797 - -0.2 341,797 - -1.6 341,799 + +0.1 341,976 + +0.2 341,989 + +0.1 341,989 + -0.1 341,989 + -0.6 342,018 - +0.5 342,037 + -0.0 342,045 + +0.0 342,045 + -1.1 342,048 - +0.3 342,072 - -1.7 342,194 + -0.1 342,195 - +0.9 342,195 - +0.7 342,562 - H281DRAFT_03818 0.17 +0.6 342,670 - H281DRAFT_03818 0.23 -0.2 342,721 - H281DRAFT_03818 0.26 -0.6 342,822 + H281DRAFT_03818 0.33 +0.5 342,822 + H281DRAFT_03818 0.33 +3.3 342,861 + H281DRAFT_03818 0.35 +0.3 342,861 + H281DRAFT_03818 0.35 +0.1 342,880 + H281DRAFT_03818 0.36 +0.2 342,964 - H281DRAFT_03818 0.41 +0.5 343,172 + H281DRAFT_03818 0.54 +0.2 343,940 - -0.8 344,142 - H281DRAFT_03819 0.11 +0.6 344,325 + H281DRAFT_03819 0.23 +0.0 344,325 + H281DRAFT_03819 0.23 +0.7 344,325 + H281DRAFT_03819 0.23 -1.0 344,446 - H281DRAFT_03819 0.30 +0.4 344,466 + H281DRAFT_03819 0.31 +0.9 344,467 - H281DRAFT_03819 0.32 -0.0 344,467 - H281DRAFT_03819 0.32 -0.3 344,467 - H281DRAFT_03819 0.32 +0.4 344,467 - H281DRAFT_03819 0.32 -0.6 344,467 - H281DRAFT_03819 0.32 +0.5 344,505 + H281DRAFT_03819 0.34 -0.2 344,534 + H281DRAFT_03819 0.36 -0.9 344,820 + H281DRAFT_03819 0.54 -0.5 344,820 + H281DRAFT_03819 0.54 -0.4 344,820 + H281DRAFT_03819 0.54 -1.0 344,820 + +0.0 344,820 + H281DRAFT_03819 0.54 +0.1 344,820 + H281DRAFT_03819 0.54 +1.4 344,822 + H281DRAFT_03819 0.54 +0.5 344,823 - H281DRAFT_03819 0.54 -0.3 344,833 - H281DRAFT_03819 0.55 -0.4
Or see this region's nucleotide sequence