Experiment: Pimelic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03329 and H281DRAFT_03330 are separated by 78 nucleotides H281DRAFT_03330 and H281DRAFT_03331 are separated by 87 nucleotides H281DRAFT_03331 and H281DRAFT_03332 are separated by 134 nucleotides H281DRAFT_03332 and H281DRAFT_03333 are separated by 173 nucleotides
H281DRAFT_03329: H281DRAFT_03329 - hypothetical protein, at 388,234 to 388,491
_03329
H281DRAFT_03330: H281DRAFT_03330 - Uncharacterized conserved protein PhnB, glyoxalase superfamily, at 388,570 to 389,031
_03330
H281DRAFT_03331: H281DRAFT_03331 - membrane-associated protein, at 389,119 to 389,766
_03331
H281DRAFT_03332: H281DRAFT_03332 - Acetyltransferases, at 389,901 to 390,428
_03332
H281DRAFT_03333: H281DRAFT_03333 - hypothetical protein, at 390,602 to 391,663
_03333
Position (kb) 389
390 Strain fitness (log2 ratio) -1
0
1 at 388.490 kb on - strand at 388.801 kb on - strand, within H281DRAFT_03330 at 389.473 kb on - strand, within H281DRAFT_03331 at 389.473 kb on - strand, within H281DRAFT_03331 at 389.474 kb on + strand at 389.475 kb on - strand, within H281DRAFT_03331 at 389.475 kb on - strand, within H281DRAFT_03331 at 389.681 kb on + strand, within H281DRAFT_03331 at 389.681 kb on + strand, within H281DRAFT_03331 at 389.692 kb on - strand, within H281DRAFT_03331 at 390.147 kb on + strand, within H281DRAFT_03332 at 390.166 kb on + strand, within H281DRAFT_03332 at 390.166 kb on + strand, within H281DRAFT_03332 at 390.166 kb on + strand, within H281DRAFT_03332 at 390.295 kb on - strand, within H281DRAFT_03332 at 390.322 kb on + strand, within H281DRAFT_03332 at 390.561 kb on + strand at 390.622 kb on + strand at 390.636 kb on + strand at 390.637 kb on - strand at 390.657 kb on + strand at 390.658 kb on - strand at 390.658 kb on - strand at 390.660 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pimelic (C) remove 388,490 - -0.2 388,801 - H281DRAFT_03330 0.50 -1.2 389,473 - H281DRAFT_03331 0.55 +0.4 389,473 - H281DRAFT_03331 0.55 +0.2 389,474 + +1.5 389,475 - H281DRAFT_03331 0.55 -0.4 389,475 - H281DRAFT_03331 0.55 +1.0 389,681 + H281DRAFT_03331 0.87 +1.3 389,681 + H281DRAFT_03331 0.87 +0.3 389,692 - H281DRAFT_03331 0.88 +0.2 390,147 + H281DRAFT_03332 0.47 -0.0 390,166 + H281DRAFT_03332 0.50 -0.0 390,166 + H281DRAFT_03332 0.50 -0.3 390,166 + H281DRAFT_03332 0.50 -0.7 390,295 - H281DRAFT_03332 0.75 -1.2 390,322 + H281DRAFT_03332 0.80 -0.2 390,561 + +1.3 390,622 + +0.2 390,636 + -0.7 390,637 - +0.5 390,657 + -0.2 390,658 - -0.3 390,658 - +0.4 390,660 + +0.7
Or see this region's nucleotide sequence