Experiment: Pimelic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03152 and H281DRAFT_03153 are separated by 43 nucleotides H281DRAFT_03153 and H281DRAFT_03154 overlap by 4 nucleotides H281DRAFT_03154 and H281DRAFT_03155 are separated by 328 nucleotides H281DRAFT_03155 and H281DRAFT_03156 overlap by 4 nucleotides
H281DRAFT_03152: H281DRAFT_03152 - hypothetical protein, at 191,092 to 191,673
_03152
H281DRAFT_03153: H281DRAFT_03153 - two component transcriptional regulator, LuxR family, at 191,717 to 192,364
_03153
H281DRAFT_03154: H281DRAFT_03154 - two-component system, NarL family, sensor kinase, at 192,361 to 193,782
_03154
H281DRAFT_03155: H281DRAFT_03155 - Protein of unknown function (DUF3311), at 194,111 to 194,308
_03155
H281DRAFT_03156: H281DRAFT_03156 - solute:Na+ symporter, SSS family, at 194,305 to 195,786
_03156
Position (kb) 192
193
194 Strain fitness (log2 ratio) -1
0
1
2 at 191.384 kb on + strand, within H281DRAFT_03152 at 191.517 kb on + strand, within H281DRAFT_03152 at 191.619 kb on + strand at 191.619 kb on + strand at 191.620 kb on - strand at 191.818 kb on + strand, within H281DRAFT_03153 at 192.078 kb on + strand, within H281DRAFT_03153 at 192.353 kb on + strand at 193.284 kb on - strand, within H281DRAFT_03154 at 193.341 kb on - strand, within H281DRAFT_03154 at 193.476 kb on - strand, within H281DRAFT_03154 at 193.728 kb on + strand at 193.814 kb on - strand at 193.834 kb on - strand at 193.869 kb on + strand at 193.870 kb on - strand at 193.872 kb on + strand at 193.873 kb on - strand at 193.962 kb on - strand at 194.094 kb on - strand at 194.094 kb on - strand at 194.099 kb on + strand at 194.195 kb on + strand, within H281DRAFT_03155 at 194.282 kb on + strand, within H281DRAFT_03155 at 194.572 kb on - strand, within H281DRAFT_03156 at 194.765 kb on + strand, within H281DRAFT_03156
Per-strain Table
Position Strand Gene LocusTag Fraction Pimelic (C) remove 191,384 + H281DRAFT_03152 0.50 +0.5 191,517 + H281DRAFT_03152 0.73 -1.4 191,619 + +0.8 191,619 + -0.3 191,620 - +0.4 191,818 + H281DRAFT_03153 0.16 +0.1 192,078 + H281DRAFT_03153 0.56 +0.1 192,353 + -1.5 193,284 - H281DRAFT_03154 0.65 +0.7 193,341 - H281DRAFT_03154 0.69 +0.7 193,476 - H281DRAFT_03154 0.78 +1.1 193,728 + -0.3 193,814 - -0.0 193,834 - +0.5 193,869 + -0.7 193,870 - +0.7 193,872 + +1.2 193,873 - -0.3 193,962 - -0.1 194,094 - -0.3 194,094 - -1.2 194,099 + +0.7 194,195 + H281DRAFT_03155 0.42 -0.6 194,282 + H281DRAFT_03155 0.86 -0.0 194,572 - H281DRAFT_03156 0.18 +0.7 194,765 + H281DRAFT_03156 0.31 +1.8
Or see this region's nucleotide sequence